Factsheet for Solyc04g006960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	95.7	95.7
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.11	71.01
AT3G25620.2	Thale cress	cytosol, nucleus, plasma membrane, plastid	67.56	67.86
CDY46506	Canola	cytosol, peroxisome, plasma membrane	67.11	67.81
Bra026514.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.81	67.52
CDY51602	Canola	plastid	65.93	66.82
CDY48079	Canola	plastid	65.04	66.02
CDX99764	Canola	cytosol, peroxisome, plasma membrane	66.96	65.99
KRH75541	Soybean	cytosol, peroxisome, plasma membrane, plastid	65.19	64.9
KRH34780	Soybean	cytosol, peroxisome, plasma membrane	65.48	64.62
KRG92003	Soybean	cytosol	64.44	63.78
KRH37571	Soybean	cytosol, peroxisome, plasma membrane, plastid	58.52	63.4
KRH71117	Soybean	cytosol, peroxisome, plasma membrane, plastid	63.26	62.43
Bra025152.1-P	Field mustard	plastid	43.7	59.6
Solyc08g075430.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.15	58.67
Solyc08g005580.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.0	57.71
Solyc12g013630.1.1	Tomato	cytosol, peroxisome, plasma membrane	50.52	54.3
Solyc07g063400.2.1	Tomato	cytosol, peroxisome, plasma membrane	49.19	54.16
Solyc12g013640.1.1	Tomato	cytosol, peroxisome, plasma membrane	49.48	53.02
Solyc11g018690.1.1	Tomato	cytosol	24.44	48.25
Solyc11g018680.1.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	20.59	47.93
Solyc04g070970.2.1	Tomato	cytosol, peroxisome, plasma membrane	43.7	40.86
Solyc01g006720.2.1	Tomato	plastid	42.96	40.06
Solyc07g065780.1.1	Tomato	mitochondrion	25.48	38.65
Solyc05g056470.1.1	Tomato	cytosol, peroxisome, plasma membrane	24.89	27.36
Solyc07g053300.1.1	Tomato	cytosol	24.44	27.14
Solyc07g062630.1.1	Tomato	cytosol, peroxisome, plasma membrane	24.89	27.05
Solyc03g007690.1.1	Tomato	plastid	23.56	26.63
Solyc03g113690.1.1	Tomato	plastid	25.19	25.84
Solyc05g008350.2.1	Tomato	nucleus, plastid	27.11	25.77
Solyc04g010210.1.1	Tomato	extracellular	26.67	25.21
Solyc09g005970.1.1	Tomato	plasma membrane	27.11	24.8
Solyc04g010200.1.1	Tomato	cytosol, peroxisome, plasma membrane	26.37	24.79
Solyc05g054890.2.1	Tomato	cytosol	26.67	24.0
Solyc09g098410.1.1	Tomato	nucleus	25.78	23.87
Solyc01g097430.2.1	Tomato	cytosol, nucleus	25.63	20.64

Protein Annotations

MapMan:11.4.4.1	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	UniProt:K4BNK3	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF303	SMART:SM00382	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc04g006960.2	EnsemblPlants:Solyc04g006960.2.1	TMHMM:TMhelix	UniParc:UPI00027665F2	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:649479..653198

Molecular Weight (calculated)

76723.8 Da

IEP (calculated)

9.410

GRAVY (calculated)

0.043

Length

675 amino acids

Sequence
(BLAST)

001: MLPHDQENSS NIHGGSSNVL VRARMDNISL QIEPNGPTCD VSPRVNDDRI SNHQQSHHAK LSILRESLHP VTLKFEDVSY TIKLKSNKGG YFFSHQQKQN
101: RVILQNVMGI VKPGELLAML GPSGSGKTTL LTSLAGRLHG KFSGNITYND QQFSSSMKRK TGFVTQDDVL YPHLTVFETL TYAALLRLPS KLTKEEKIEQ
201: VELVIMELGL TRCRNSMIGG QLFRGISGGE RKRVSIGQEM LVNPSLLLLD EPTSGLDSTT AQRIVATLRW LARGGRTVVT TIHQPSSTLF RMFDKIIVLT
301: EGCPIYYGKS SLVMEYFASI GYAPGFNFMN PADFLLDLAN GITHDTRHYD QHELIMKQDQ SENQNATKQS LISSYRKNIY PLLKEEINQS CKRSIRSSSI
401: SRDHQWTTSW WLQFKVLLGR GLKERKHEAY SGLRIFQVMS VSFLSGLLWW HCNTNHIMDQ VGLLFFFSIF WGFFPLFSAI FAFPQERPML IRERSSGMYR
501: LSSYYFARSV GDLPMELVLP TIFVTVTYWM GGLKPKFLTF ILTLLIILLN VLVSQGIGLA LGAILMDVKQ ATTLSSVLML VFLLASGYYI QHIPIFIDWL
601: KYISFSHYCY KLLLGVQYSR NEVYECGIGK YCEVLEFPPI KYLGIDNLVL DVVALVVMLV VYRLLAYVAL RLWHQ

Best Arabidopsis Sequence Match ( AT3G25620.2 )
(BLAST)

001: MMPPNEQESS FPKTPSANRH ETSPVQENRF SSPSHVNPCL DDDNDHDGPS HQSRQSSVLR QSLRPIILKF EELTYSIKSQ TGKGSYWFGS QEPKPNRLVL
101: KCVSGIVKPG ELLAMLGPSG SGKTTLVTAL AGRLQGKLSG TVSYNGEPFT SSVKRKTGFV TQDDVLYPHL TVMETLTYTA LLRLPKELTR KEKLEQVEMV
201: VSDLGLTRCC NSVIGGGLIR GISGGERKRV SIGQEMLVNP SLLLLDEPTS GLDSTTAARI VATLRSLARG GRTVVTTIHQ PSSRLYRMFD KVLVLSEGCP
301: IYSGDSGRVM EYFGSIGYQP GSSFVNPADF VLDLANGITS DTKQYDQIET NGRLDRLEEQ NSVKQSLISS YKKNLYPPLK EEVSRTFPQD QTNARLRKKA
401: ITNRWPTSWW MQFSVLLKRG LKERSHESFS GLRIFMVMSV SLLSGLLWWH SRVAHLQDQV GLLFFFSIFW GFFPLFNAIF TFPQERPMLI KERSSGIYRL
501: SSYYIARTVG DLPMELILPT IFVTITYWMG GLKPSLTTFI MTLMIVLYNV LVAQGVGLAL GAILMDAKKA ATLSSVLMLV FLLAGGYYIQ HIPGFIAWLK
601: YVSFSHYCYK LLVGVQYTWD EVYECGSGLH CSVMDYEGIK NLRIGNMMWD VLALAVMLLL YRVLAYLALR NL

Arabidopsis Description

ABCG21ABC transporter G family member 21 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA72]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.