Factsheet for Solyc01g006720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 3
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054994	Potato	plastid	98.76	98.48
KRH32924	Soybean	cytosol, peroxisome, plasma membrane, plastid	79.01	77.51
VIT_08s0032g00790.t01	Wine grape	plastid	79.97	77.41
KRH72054	Soybean	cytosol, peroxisome, plasma membrane, plastid	79.42	77.39
CDY04991	Canola	plastid	75.28	75.91
CDX70095	Canola	plastid	75.28	75.59
KRG96304	Soybean	cytosol, peroxisome, plasma membrane, plastid	75.69	74.46
KRH68048	Soybean	plastid	75.83	74.19
CDY14079	Canola	plasma membrane	76.24	73.4
AT5G06530.1	Thale cress	plasma membrane	76.11	73.37
Bra028729.1-P	Field mustard	cytosol, peroxisome, plasma membrane	75.41	72.61
CDX98933	Canola	plasma membrane	75.55	72.45
Bra009203.1-P	Field mustard	plasma membrane	75.41	72.32
GSMUA_Achr8P04700_001	Banana	cytosol, peroxisome, plasma membrane, plastid	72.1	70.16
TraesCS4D01G271500.1	Wheat	plastid	70.03	67.42
EER92832	Sorghum	plasma membrane	70.99	67.37
TraesCS4B01G272400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	70.03	66.71
TraesCS4A01G032900.1	Wheat	plastid	70.17	66.67
HORVU4Hr1G072620.1	Barley	plastid	69.61	66.58
Zm00001d027723_P002	Maize	cytosol, nucleus, plasma membrane	69.2	66.53
CDY23205	Canola	plastid	67.54	66.53
Os03t0157400-01	Rice	cytosol, peroxisome, plasma membrane	70.17	65.89
CDX95330	Canola	plastid	66.16	64.91
GSMUA_Achr6P23160_001	Banana	plastid	65.75	64.76
GSMUA_Achr1P04620_001	Banana	cytosol, peroxisome, plasma membrane, plastid	63.67	64.48
Solyc04g070970.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.49	56.65
Solyc12g013630.1.1	Tomato	cytosol, peroxisome, plasma membrane	40.88	47.13
Solyc07g063400.2.1	Tomato	cytosol, peroxisome, plasma membrane	39.64	46.82
Solyc08g075430.2.1	Tomato	cytosol, peroxisome, plasma membrane	40.88	45.82
Solyc11g018690.1.1	Tomato	cytosol	21.55	45.61
Solyc08g005580.2.1	Tomato	cytosol, peroxisome, plasma membrane	40.75	45.04
Solyc12g013640.1.1	Tomato	cytosol, peroxisome, plasma membrane	39.09	44.92
Solyc04g006960.2.1	Tomato	cytosol, nucleus, peroxisome	40.06	42.96
Bra033441.1-P	Field mustard	plastid	65.61	41.96
Solyc07g065780.1.1	Tomato	mitochondrion	25.14	40.9
Solyc11g018680.1.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	16.3	40.69
Solyc07g053300.1.1	Tomato	cytosol	22.93	27.3
Solyc05g056470.1.1	Tomato	cytosol, peroxisome, plasma membrane	22.79	26.87
Solyc07g062630.1.1	Tomato	cytosol, peroxisome, plasma membrane	22.65	26.41
Solyc04g010210.1.1	Tomato	extracellular	25.28	25.63
Solyc05g008350.2.1	Tomato	nucleus, plastid	25.0	25.49
Solyc04g010200.1.1	Tomato	cytosol, peroxisome, plasma membrane	25.28	25.49
Solyc09g005970.1.1	Tomato	plasma membrane	25.97	25.47
Solyc05g054890.2.1	Tomato	cytosol	26.38	25.47
Solyc03g007690.1.1	Tomato	plastid	20.17	24.46
Solyc09g098410.1.1	Tomato	nucleus	24.03	23.87
Solyc03g113690.1.1	Tomato	plastid	20.99	23.1
Solyc01g097430.2.1	Tomato	cytosol, nucleus	24.59	21.24

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150
GO:GO:0009414	GO:GO:0009628	GO:GO:0010148	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	UniProt:K4ASN8	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF286
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g006720.2	EnsemblPlants:Solyc01g006720.2.1	TMHMM:TMhelix	UniParc:UPI00027624C9
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:1301729..1309554

Molecular Weight (calculated)

79997.1 Da

IEP (calculated)

9.145

GRAVY (calculated)

-0.031

Length

724 amino acids

Sequence
(BLAST)

001: MGGGTKSSPM NGDVAGGGGG PETLSRKSSR RLTGASPGRS GGGRNNTHIR KSRSAQLKFD LDEVSSGAAL SRASSASLGL SFSFTGFTVP SDEIADMKPF
101: SDDDDIAEDI EAGTRKMKIQ AEPTLPIYLK FTEVCYKVVI KGVTSTREKE ILTGISGSVD PGEVLAMMGP SGSGKTTLLS LLGGRVKEPT GGSITYNEQP
201: YSKHLKSRIG FVTQDDILFP HLTVRETLTY AARLRLPKKL TKEEKQKRAI DVIYELGLER CQDTMIGGSF VRGVSGGERK RVCIGNEIII NPSLLFLDEP
301: TSGLDSTTAL RTVEILHDIA EAGKTVITTI HQPSSRLFHK FDKLILLGKG SLLYFGKASE AMDYFSTIGC TPLISMNPAE FLLDLANGNL NDVSVPSELE
401: DKVQIGNSDT ETRNGKPSPA IVHEYLVEAY ETRVAESEKK KLLAPMMIDE ELKSKVVTSK REWGASWWTQ YSILFWRGLK ERRHDYFSWL RITQVVATAV
501: ILGMLWWQSG GDSPKHMQEQ AGLLFFIAVF WGFFPVFTAI FTFPQERAML NKERSADMYR LSAYFLARTT SDIPLDLILP VLFILVVYFM AGLKHDVCAF
601: FLTVLTTFLC IVAAQGLGLA IGATLMDLKK ATTLASVTVM TFMLAGGYFV KEVPVFISWL RYLSYNYQTY KLLLKVQYKE KNDWVDGIKV GNGVKEVSTL
701: LAMVFGYRLL AYISLRRMKL HSGA

Best Arabidopsis Sequence Match ( AT5G06530.2 )
(BLAST)

001: MSMEKPPLAS GLARTRSEQL YETVAADIRS PHGSMDANGV PATAPAAVGG GGTLSRKSSR RLMGMSPGRS SGAGTHIRKS RSAQLKLELE EVSSGAALSR
101: ASSASLGLSF SFTGFAMPPE EISDSKPFSD DEMIPEDIEA GKKKPKFQAE PTLPIFLKFR DVTYKVVIKK LTSSVEKEIL TGISGSVNPG EVLALMGPSG
201: SGKTTLLSLL AGRISQSSTG GSVTYNDKPY SKYLKSKIGF VTQDDVLFPH LTVKETLTYA ARLRLPKTLT REQKKQRALD VIQELGLERC QDTMIGGAFV
301: RGVSGGERKR VSIGNEIIIN PSLLLLDEPT SGLDSTTALR TILMLHDIAE AGKTVITTIH QPSSRLFHRF DKLILLGRGS LLYFGKSSEA LDYFSSIGCS
401: PLIAMNPAEF LLDLANGNIN DISVPSELDD RVQVGNSGRE TQTGKPSPAA VHEYLVEAYE TRVAEQEKKK LLDPVPLDEE AKAKSTRLKR QWGTCWWEQY
501: CILFCRGLKE RRHEYFSWLR VTQVLSTAVI LGLLWWQSDI RTPMGLQDQA GLLFFIAVFW GFFPVFTAIF AFPQERAMLN KERAADMYRL SAYFLARTTS
601: DLPLDFILPS LFLLVVYFMT GLRISPYPFF LSMLTVFLCI IAAQGLGLAI GAILMDLKKA TTLASVTVMT FMLAGGFFVK KVPVFISWIR YLSFNYHTYK
701: LLLKVQYQDF AVSINGMRID NGLTEVAALV VMIFGYRLLA YLSLRQMKIV T

Arabidopsis Description

ABCG22ABC transporter G family member 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93YS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.