Factsheet for PGSC0003DMT400054994

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006720.2.1	Tomato	plastid	98.48	98.76
KRH32924	Soybean	cytosol, peroxisome, plasma membrane, plastid	78.93	77.64
VIT_08s0032g00790.t01	Wine grape	plastid	79.89	77.54
KRH72054	Soybean	cytosol, peroxisome, plasma membrane, plastid	79.34	77.52
CDY04991	Canola	plastid	75.07	75.91
CDX70095	Canola	plastid	75.07	75.59
KRG96304	Soybean	cytosol, peroxisome, plasma membrane, plastid	75.9	74.86
KRH68048	Soybean	plastid	75.9	74.46
CDY14079	Canola	plasma membrane	76.03	73.4
AT5G06530.1	Thale cress	plasma membrane	75.76	73.24
Bra028729.1-P	Field mustard	cytosol, peroxisome, plasma membrane	75.21	72.61
CDX98933	Canola	plasma membrane	75.34	72.45
Bra009203.1-P	Field mustard	plasma membrane	75.21	72.32
GSMUA_Achr8P04700_001	Banana	cytosol, peroxisome, plasma membrane, plastid	71.9	70.16
EER92832	Sorghum	plasma membrane	70.66	67.23
TraesCS4D01G271500.1	Wheat	plastid	69.56	67.15
TraesCS4B01G272400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	69.56	66.45
TraesCS4A01G032900.1	Wheat	plastid	69.7	66.4
Zm00001d027723_P002	Maize	cytosol, nucleus, plasma membrane	68.87	66.4
HORVU4Hr1G072620.1	Barley	plastid	69.15	66.31
CDY23205	Canola	plastid	67.08	66.26
Os03t0157400-01	Rice	cytosol, peroxisome, plasma membrane	69.7	65.63
CDX95330	Canola	plastid	65.7	64.63
GSMUA_Achr6P23160_001	Banana	plastid	65.43	64.63
GSMUA_Achr1P04620_001	Banana	cytosol, peroxisome, plasma membrane, plastid	63.22	64.2
PGSC0003DMT400002062	Potato	cytosol	58.4	55.79
PGSC0003DMT400039671	Potato	plasma membrane	37.6	49.1
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	39.94	47.31
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	41.05	46.13
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	41.18	45.17
PGSC0003DMT400039676	Potato	plasma membrane	39.12	45.15
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	36.64	44.11
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	39.94	42.96
Bra033441.1-P	Field mustard	plastid	65.15	41.78
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	23.0	27.47
PGSC0003DMT400032370	Potato	plasma membrane	22.86	26.77
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	26.45	26.52
PGSC0003DMT400029838	Potato	extracellular	24.93	26.04
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	22.73	25.74
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	25.21	25.28
PGSC0003DMT400061466	Potato	plasma membrane	25.62	25.1
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	24.93	25.03
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	20.25	24.66
PGSC0003DMT400084876	Potato	cytosol	24.1	24.01
PGSC0003DMT400062852	Potato	plastid	20.94	23.0
PGSC0003DMT400050007	Potato	cytosol	24.24	21.15

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414
GO:GO:0009628	GO:GO:0010148	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M1BX66	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400021343
PGSC:PGSC0003DMG400021343	EnsemblPlants:PGSC0003DMT400054994	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF286
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002965B48	SEG:seg	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400021343]

Coordinates

chr1:-:2556992..2566447

Molecular Weight (calculated)

80228.4 Da

IEP (calculated)

9.036

GRAVY (calculated)

-0.034

Length

726 amino acids

Sequence
(BLAST)

001: MGGGTKSSPM NGDVAGGGGG SETLSRKSSR RLTGASPGRS GVGSKNNTHI RKSRSAQLKF DLDEVSSGAA LSRASSASLG LSFSFTGFTV PSDEIADMKP
101: FSDDDDDIPE DIEAGTRKMK IQAEPTLPIY LKFTEVCYKV VIKGVTSTRE KEILTGISGS VDPGEVLAMM GPSGSGKTTL LSLLGGRVKE PTGGSITYNE
201: QPYSKHLKSR IGFVTQDDIL FPHLTVRETL TYAARLRLPK KLTKEEKQKR AIDVIYELGL ERCQDTMIGG SFVRGVSGGE RKRVCIGNEI IINPSLLFLD
301: EPTSGLDSTT ALRTVEILHD IAEAGKTVIT TIHQPSSRLF HKFDKLILLG KGSLLYFGKA SEAMDYFSTI GCTPLIPMNP AEFLLDLANG NLNDVSVPSE
401: LEDKVQIGNS DTETRNGKPS PAIVHEYLVE AYETRVAESE KKKLMAPMMI DEELKSKVVT SKREWGASWW TQYSILFWRG LKERRHDYFS WLRITQVVAT
501: AVILGMLWWQ SGGGSPKHMQ EQAGLLFFIA VFWGFFPVFT AIFTFPQERA MLDKERSADM YRLSAYFLAR TTSDIPLDLI LPVLFILVVY FMAGLKHDVC
601: AFFLTVLTTF LCIVAAQGLG LAIGATLMDL KKATTLASVT VMTFMLAGGY FVKEVPVFIS WLRYLSYNYQ TYKLLLKVQY KEKNDWVDGI KVGNGVREVS
701: TLLAMVFGYR LLAYISLRRM KLHSGA

Best Arabidopsis Sequence Match ( AT5G06530.2 )
(BLAST)

001: MSMEKPPLAS GLARTRSEQL YETVAADIRS PHGSMDANGV PATAPAAVGG GGTLSRKSSR RLMGMSPGRS SGAGTHIRKS RSAQLKLELE EVSSGAALSR
101: ASSASLGLSF SFTGFAMPPE EISDSKPFSD DEMIPEDIEA GKKKPKFQAE PTLPIFLKFR DVTYKVVIKK LTSSVEKEIL TGISGSVNPG EVLALMGPSG
201: SGKTTLLSLL AGRISQSSTG GSVTYNDKPY SKYLKSKIGF VTQDDVLFPH LTVKETLTYA ARLRLPKTLT REQKKQRALD VIQELGLERC QDTMIGGAFV
301: RGVSGGERKR VSIGNEIIIN PSLLLLDEPT SGLDSTTALR TILMLHDIAE AGKTVITTIH QPSSRLFHRF DKLILLGRGS LLYFGKSSEA LDYFSSIGCS
401: PLIAMNPAEF LLDLANGNIN DISVPSELDD RVQVGNSGRE TQTGKPSPAA VHEYLVEAYE TRVAEQEKKK LLDPVPLDEE AKAKSTRLKR QWGTCWWEQY
501: CILFCRGLKE RRHEYFSWLR VTQVLSTAVI LGLLWWQSDI RTPMGLQDQA GLLFFIAVFW GFFPVFTAIF AFPQERAMLN KERAADMYRL SAYFLARTTS
601: DLPLDFILPS LFLLVVYFMT GLRISPYPFF LSMLTVFLCI IAAQGLGLAI GAILMDLKKA TTLASVTVMT FMLAGGFFVK KVPVFISWIR YLSFNYHTYK
701: LLLKVQYQDF AVSINGMRID NGLTEVAALV VMIFGYRLLA YLSLRQMKIV T

Arabidopsis Description

ABCG22ABC transporter G family member 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93YS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.