Factsheet for PGSC0003DMT400039671

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 3
plasma membrane 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g013630.1.1	Tomato	cytosol, peroxisome, plasma membrane	95.86	84.87
PGSC0003DMT400039676	Potato	plasma membrane	82.73	73.13
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	74.1	67.21
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.22	63.56
KRH22136	Soybean	cytosol, peroxisome, plasma membrane	64.75	57.42
Bra019051.1-P	Field mustard	plasma membrane	63.85	55.73
CDY29837	Canola	plasma membrane	64.03	55.28
CDY29304	Canola	cytosol, peroxisome, plasma membrane	63.31	55.17
Bra026352.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.31	55.17
CDX89252	Canola	cytosol, peroxisome, plasma membrane	63.31	55.17
CDX92829	Canola	plasma membrane	63.67	54.97
KRH55354	Soybean	cytosol, peroxisome, plasma membrane	61.15	54.49
GSMUA_Achr2P02720_001	Banana	mitochondrion	58.09	54.29
AT4G27420.1	Thale cress	cytosol, peroxisome, plasma membrane	61.87	53.92
GSMUA_Achr1P08870_001	Banana	cytosol, peroxisome, plasma membrane	57.55	52.03
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	58.09	47.85
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	55.58	47.83
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	50.72	46.77
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	54.68	45.92
PGSC0003DMT400054994	Potato	plastid	49.1	37.6
PGSC0003DMT400002062	Potato	cytosol	48.02	35.13
PGSC0003DMT400032370	Potato	plasma membrane	28.6	25.65
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	29.5	25.59
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	27.16	24.84
PGSC0003DMT400062852	Potato	plastid	28.96	24.36
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	25.9	24.16
PGSC0003DMT400029838	Potato	extracellular	29.14	23.31
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	30.22	23.2
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	29.5	22.65
PGSC0003DMT400061466	Potato	plasma membrane	30.04	22.54
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	27.88	21.44
PGSC0003DMT400084876	Potato	cytosol	27.7	21.12
PGSC0003DMT400050007	Potato	cytosol	26.98	18.03

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1B8M2
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400015343	PGSC:PGSC0003DMG400015343	EnsemblPlants:PGSC0003DMT400039671
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF257	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI000296C395	SEG:seg	:	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400015343]

Coordinates

chr12:+:813841..815847

Molecular Weight (calculated)

62050.0 Da

IEP (calculated)

9.217

GRAVY (calculated)

0.211

Length

556 amino acids

Sequence
(BLAST)

001: MLAILGPSGS GKTTLLTGLG GRLVNGHLKG VITYNNKTFS NAMNRNTGFV TQDDVLYPHL TVSETLVFTA LLRLPKTFTV EEKTAHAEAI ITQLGLTKCK
101: DIIVGGPFLR GISGGERKRV SIGQEMLINP SLLFLDEPTS GLDSTTALRI VSTLRDLAKG GRTVVLTIHQ PSSRLFYMFK KVLLLSEGNP LYFGRGEDAM
201: GYFSGIGFSP LVAMNPSDFL LDLSNGILSD DPRVLADTPI EDPASIKKTL VTAFKTNLVE NMKEQFQESD VHQVVEKLHE KKFTQWSNTW WQQFAVLFRR
301: GMKERKHESF SSLKVGEVLV VAFLCGLLWW KSNNIQDQVG LMFFYTDFWS FFPLLQAIFT FPQERMMLEK ERSSGMYRLS AYFMARTIGD LPMELVLPTI
401: FTVITYWMTG LKPSALNFFS TLFSILYNVL VSQGLGLALG AMIMDQESAT VLGSVIILSF TLAGGYFVQH VPWFISWIKY ISISQYTYKL LLGSQYNHGE
501: TYSCGINATC LVEDFPTIKT IGIGGKGISM VALAVMFFGY RFLAYVALMR VGVTKK

Best Arabidopsis Sequence Match ( AT4G27420.1 )
(BLAST)

001: MDNQEVSMDV ETPIAKTNDD RSLPFSIFKK ANNPVTLKFE NLVYTVKLKD SQGCFGKNDK TEERTILKGL TGIVKPGEIL AMLGPSGSGK TSLLTALGGR
101: VGEGKGKLTG NISYNNKPLS KAVKRTTGFV TQDDALYPNL TVTETLVFTA LLRLPNSFKK QEKIKQAKAV MTELGLDRCK DTIIGGPFLR GVSGGERKRV
201: SIGQEILINP SLLFLDEPTS GLDSTTAQRI VSILWELARG GRTVVTTIHQ PSSRLFYMFD KLLLLSEGNP VYFGLGSNAM DYFASVGYSP LVERINPSDF
301: LLDIANGVGS DESQRPEAMK AALVAFYKTN LLDSVINEVK GQDDLCNKPR ESSRVATNTY GDWPTTWWQQ FCVLLKRGLK QRRHDSFSGM KVAQIFIVSF
401: LCGLLWWQTK ISRLQDQIGL LFFISSFWAF FPLFQQIFTF PQERAMLQKE RSSGMYRLSP YFLSRVVGDL PMELILPTCF LVITYWMAGL NHNLANFFVT
501: LLVLLVHVLV SGGLGLALGA LVMDQKSATT LGSVIMLTFL LAGGYYVQHV PVFISWIKYV SIGYYTYKLL ILGQYTANEL YPCGDNGKLR CHVGDFEGIK
601: HIGFNSGLVS ALALTAMLVV YRVIAYIALT RIGKTKSG

Arabidopsis Description

ABCG9ABCG9 [Source:UniProtKB/TrEMBL;Acc:A0A178V178]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.