CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 20458513

msms PMID: 20458513 doi

S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa

National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53911	Soybean	cytosol, peroxisome, plasma membrane	90.62	93.55
KRH59586	Soybean	cytosol, peroxisome, plasma membrane	80.0	78.89
KRH40938	Soybean	cytosol, peroxisome, plasma membrane	80.31	78.59
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	72.03	72.6
CDX93119	Canola	cytosol, peroxisome, plasma membrane	66.41	70.25
Bra013141.1-P	Field mustard	cytosol, peroxisome, plasma membrane	69.22	70.09
CDX89610	Canola	cytosol, peroxisome, plasma membrane	66.25	70.08
GSMUA_Achr8P32630_001	Banana	cytosol, peroxisome, plasma membrane	56.72	69.94
AT2G13610.1	Thale cress	cytosol, peroxisome, plasma membrane	68.91	67.95
Solyc05g056470.1.1	Tomato	cytosol, peroxisome, plasma membrane	64.53	67.26
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	66.41	66.3
GSMUA_Achr9P00310_001	Banana	cytosol	50.78	62.86
Zm00001d009492_P001	Maize	mitochondrion, plasma membrane	24.69	57.45
EES01897	Sorghum	cytosol, plasma membrane, plastid	53.12	50.52
TraesCS2D01G585300.1	Wheat	plasma membrane	52.66	50.0
TraesCS2B01G612200.1	Wheat	plasma membrane	52.66	49.93
HORVU2Hr1G124860.3	Barley	nucleus, peroxisome, plastid	43.12	49.82
TraesCS2A01G574700.1	Wheat	plasma membrane	50.47	49.69
KRH27319	Soybean	cytosol, mitochondrion, plasma membrane	45.31	47.54
KRH21994	Soybean	cytosol, peroxisome, plasma membrane	45.0	47.14
Zm00001d026706_P005	Maize	plasma membrane	51.88	44.27
KRH35226	Soybean	cytosol, mitochondrion, plasma membrane	31.72	43.19
KRG89682	Soybean	cytosol, nucleus, peroxisome	40.47	39.48
KRG91599	Soybean	cytosol, plastid	35.16	39.4
KRH50602	Soybean	plastid	40.16	39.24
KRH67592	Soybean	plastid	34.38	29.97
KRG95875	Soybean	cytosol, peroxisome, plasma membrane	33.75	29.35
KRH74446	Soybean	cytosol, peroxisome, plasma membrane	30.31	28.91
KRG92984	Soybean	cytosol, peroxisome, plasma membrane	33.75	28.8
KRH22136	Soybean	cytosol, peroxisome, plasma membrane	27.97	28.55
KRH39507	Soybean	cytosol	32.03	28.08
KRH55354	Soybean	cytosol, peroxisome, plasma membrane	26.88	27.56
KRH07778	Soybean	cytosol, peroxisome, plasma membrane	26.41	25.96
KRH20507	Soybean	cytosol	25.47	25.91
KRH34992	Soybean	cytosol, plasma membrane, plastid	27.03	25.86
KRH41868	Soybean	cytosol	31.88	25.69
KRH07253	Soybean	cytosol, peroxisome, plasma membrane	26.25	25.61
KRH60557	Soybean	cytosol	31.88	25.53
KRG91794	Soybean	cytosol, peroxisome, plasma membrane, plastid	26.25	25.07
KRH28987	Soybean	cytosol, peroxisome, plasma membrane	25.78	25.0
KRH76470	Soybean	cytosol, peroxisome, plasma membrane	25.31	24.58
KRH75541	Soybean	cytosol, peroxisome, plasma membrane, plastid	25.47	24.04
KRG98450	Soybean	cytosol, peroxisome, plasma membrane	25.47	23.9
KRH73932	Soybean	cytosol, peroxisome, plasma membrane	25.47	23.76
KRH14200	Soybean	cytosol	25.47	23.76
KRG92003	Soybean	cytosol	25.16	23.61
KRH32924	Soybean	cytosol, peroxisome, plasma membrane, plastid	27.19	23.58
KRG96304	Soybean	cytosol, peroxisome, plasma membrane, plastid	27.03	23.51
KRH72054	Soybean	cytosol, peroxisome, plasma membrane, plastid	27.19	23.42
KRH71117	Soybean	cytosol, peroxisome, plasma membrane, plastid	25.0	23.39
KRH46415	Soybean	plasma membrane	17.81	23.31
KRH34780	Soybean	cytosol, peroxisome, plasma membrane	24.84	23.25
KRH68048	Soybean	plastid	26.88	23.24
KRH37571	Soybean	cytosol, peroxisome, plasma membrane, plastid	22.5	23.11
KRG90976	Soybean	plasma membrane	23.91	21.4
KRH35792	Soybean	plasma membrane	24.06	21.24

Protein Annotations

EntrezGene:100818395	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EMBL:ACUP02002737	EnsemblPlantsGene:GLYMA_04G211800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	UniProt:I1JY09	InterPro:IPR003439	EnsemblPlants:KRH64027	ProteinID:KRH64027
ProteinID:KRH64027.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF230	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002339EF7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:48370951..48372873

Molecular Weight (calculated)

71903.6 Da

IEP (calculated)

8.796

GRAVY (calculated)

0.183

Length

640 amino acids

Sequence
(BLAST)

001: MKKEGCEVEA IGINYKIRTK TTEQPFKIFT KPPQSNREDV HEAKEEERPC SGVRHVLKDV NCMAKPWEIS AIVGPSGAGK SSLLEILAGK ASPQSGSILV
101: NQEPVDKAKF RKFSGYVTQK DTLFPLLTVE ETIMFIAKLR LNLPQEQLRY RVKSLILELG LSHVARTRIG DERVRGISGG ERRRVSIGVE VIHDPKVLIL
201: DEPTSGLDST SALQIIEMLK VMADSRGRTI ILSIHQPGYR IVKLFNSLLL LANGNVLHHG TVDLLGVNLR LMGLELPLHV NVVEFAIDSI ETIQQQQKSE
301: HVQLEVPRRL PGTMQQKKGG DLGESRSGKF TLQQLFQQSK IIDIEIISSG MDITRDFANS GLRETMILTH RFSKNILRTT ELFACRTIQM LVSGLVLGSV
401: FCNLKDGLVG AEERVGLFAF ILTFLLSSTT EALPIFLQER EILMKETSSG SYRVSSYAIA NGLVYLPFLL ILAILFAMPL YWLIGLNRNF TAVLYFLMLI
501: WLVLCTANSI VVCFSALVPN FIVGNSMIAG VIGSFLLFSG YFISKHEIPN YWIFMHYISP FKYPFEGFLI NEFSNSNNCL EYLFGECVVR GEDVLKEAKL
601: GGETSRWKNV GVMVCFIFVY RFISYVILRY RCSQGVILKV

Best Arabidopsis Sequence Match ( AT2G13610.1 )
(BLAST)

001: MEKQGCEIEA LDIDYNIFVR KINVNPFGIF RRKPRPEADQ PVKTEEESLK LEDETGNKVK HVLKGVTCRA KPWEILAIVG PSGAGKSSLL EILAARLIPQ
101: TGSVYVNKRP VDRANFKKIS GYVTQKDTLF PLLTVEETLL FSAKLRLKLP ADELRSRVKS LVHELGLEAV ATARVGDDSV RGISGGERRR VSIGVEVIHD
201: PKVLILDEPT SGLDSTSALL IIDMLKHMAE TRGRTIILTI HQPGFRIVKQ FNSVLLLANG STLKQGSVDQ LGVYLRSNGL HPPLHENIVE FAIESIESIT
301: KQQRLQESRR AAHVLTPQTT LQEKRSEDSQ GESKSGKFTL QQLFQQTRVA DVGTMNIATE FTRDFANSRL EETMILTHRF SKNIFRTKEL FACRTVQMLG
401: SGIVLGLIFH NLKDDLKGAR ERVGLFAFIL TFLLTSTIEA LPIFLQEREI LMKETSSGSY RVSSYAVANG LVYLPFLLIL AILFSTPVYW LVGLNPSFMA
501: FLHFSLLIWL ILYTANSVVV CFSALVPNFI VGNSVISGVM GSFFLFSGYF ISNHEIPGYW IFMHYISLFK YPFEGFLINE FSKSNKCLEY GFGKCLVTEE
601: DLLKEERYGE ESRWRNVVIM LCFVLLYRFI SYVILRCRCS QRSFKTTLA

Arabidopsis Description

ABCG5ABC transporter G family member 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIT6]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.