Factsheet for AT5G52860.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022614.1-P	Field mustard	plastid	90.83	90.83
CDY27043	Canola	plastid	90.83	90.83
CDX96159	Canola	plastid	89.81	89.81
AT4G25750.1	Thale cress	plasma membrane	79.63	81.28
KRH35226	Soybean	cytosol, mitochondrion, plasma membrane	57.89	72.55
VIT_16s0050g01620.t01	Wine grape	cytosol	72.16	71.19
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	68.25	67.45
Solyc03g007690.1.1	Tomato	plastid	68.25	67.34
KRG91599	Soybean	cytosol, plastid	65.2	67.25
GSMUA_Achr7P10690_001	Banana	cytosol	48.39	61.16
GSMUA_Achr6P05760_001	Banana	cytosol, nucleus, plastid	55.01	57.96
Os06t0503100-01	Rice	cytosol, peroxisome, plasma membrane	43.8	53.09
Zm00001d044895_P001	Maize	cytosol, peroxisome, plasma membrane	55.52	52.91
EES14035	Sorghum	cytosol, peroxisome, plasma membrane	55.18	51.42
TraesCS7A01G342000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	55.01	48.94
HORVU7Hr1G081250.1	Barley	mitochondrion	54.84	48.94
TraesCS7D01G337600.1	Wheat	cytosol, peroxisome, plasma membrane	54.84	48.79
TraesCS7B01G240900.1	Wheat	cytosol, peroxisome, plasma membrane	54.67	48.64
AT1G53270.1	Thale cress	plasma membrane	42.78	42.71
AT5G19410.2	Thale cress	plastid	43.63	40.6
AT2G13610.1	Thale cress	cytosol, peroxisome, plasma membrane	41.6	37.75
AT3G55100.1	Thale cress	cytosol, peroxisome, plasma membrane	33.11	29.46
AT3G55110.1	Thale cress	cytosol, peroxisome, plasma membrane	34.13	28.39
AT3G55090.1	Thale cress	cytosol, peroxisome, plasma membrane	34.3	27.45
AT5G13580.1	Thale cress	cytosol, peroxisome, plasma membrane	33.45	27.1
AT3G55130.1	Thale cress	mitochondrion, peroxisome, plasma membrane	32.94	26.76
AT3G53510.1	Thale cress	plasma membrane	32.94	26.25
AT2G39350.1	Thale cress	cytosol	32.77	26.08
AT2G37360.1	Thale cress	cytosol, peroxisome, plasma membrane	32.26	25.17
AT4G27420.1	Thale cress	cytosol, peroxisome, plasma membrane	25.81	23.82
AT3G25620.2	Thale cress	cytosol, nucleus, plasma membrane, plastid	26.83	23.51
AT1G31770.1	Thale cress	cytosol, nucleus, peroxisome	25.81	23.46
AT1G71960.1	Thale cress	cytosol, peroxisome, plasma membrane	25.81	22.96
AT3G13220.1	Thale cress	cytosol, peroxisome, plasma membrane	25.98	22.34
AT2G01320.3	Thale cress	peroxisome, plastid, vacuole	25.98	21.02
AT5G06530.1	Thale cress	plasma membrane	26.49	20.77

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	EntrezGene:835363	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	ProteinID:AED96269.1	ArrayExpress:AT5G52860	EnsemblPlantsGene:AT5G52860	RefSeq:AT5G52860	TAIR:AT5G52860
RefSeq:AT5G52860-TAIR-G	EnsemblPlants:AT5G52860.1	TAIR:AT5G52860.1	ProteinID:BAB10434.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	RefSeq:NP_200098.1	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	PO:PO:0000037	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009052	PO:PO:0025022	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF290	UniProt:Q9FLX5	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI00000A617E	SEG:seg	:	:	:

Description

ABCG8ABC transporter G family member 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX5]

Coordinates

chr5:-:21419590..21421715

Molecular Weight (calculated)

65937.3 Da

IEP (calculated)

9.704

GRAVY (calculated)

0.406

Length

589 amino acids

Sequence
(BLAST)

001: MEIPPSPPPE TAAYTLTTSS ISYTIPKTSL SLLRFPATEP PSFILRNITL TAHPTEILAV VGPSGAGKST LLDILASKTS PTSGSILLNS IPINPSSYRK
101: ISSYVPQHDS FFPLLTVSET FSFAACLLLP NPSIVSETVT SLLSELNLTH LSHTRLAQGL SGGERRRVSI GLSLLHDPCF LLLDEPTSGL DSKSAFDVIH
201: ILKSIAVSRQ RTVILSIHQP SFKILSIIDR LLLLSKGTVV YHGRLDSLEG FLLFKGFTVP PQLNSLEYAM EILQELRESD GNTDATALPS IENRKQREKQ
301: SIVRYRKSRI TEISLLARRF WKIIYRTRQL LLTNALEALV VGLVLGTIYI NIGIGKAGIE KRFGMFAFTL TFLLSSTTET LPIFINERPI LLRETSSGIY
401: RLSSHILANT LVFLPYLFVI SIIYSVSVYF LIGLCPTWQA FGYFVLVIWI ILLMANSFVL FLSSLAPNYI TGTSLVTILL AAFFLFSGYF ISKESLPKYW
501: LFMYFFSMYK YALDALLINE YSCLASKCLV WLEEAQTKIC MVTGGDVLKK KGLHEKQRWF NVYVLLGFFV LYRVLCFLAL LRRVSGSKR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.