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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • mitochondrion 1
  • plasma membrane 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43362 Canola cytosol, peroxisome, plasma membrane 92.99 93.54
Bra039378.1-P Field mustard cytosol, peroxisome, plasma membrane 92.99 93.54
CDY24203 Canola peroxisome 92.7 93.25
VIT_19s0015g00960.t01 Wine grape peroxisome 76.64 76.53
Solyc07g065780.1.1 Tomato mitochondrion 46.86 72.13
KRH14200 Soybean cytosol 70.8 70.7
KRG98450 Soybean cytosol, peroxisome, plasma membrane 70.36 70.67
KRH73932 Soybean cytosol, peroxisome, plasma membrane 70.36 70.26
KRH46415 Soybean plasma membrane 48.03 67.28
OQU76682 Sorghum mitochondrion, plasma membrane 56.06 64.54
TraesCS7D01G375300.1 Wheat cytosol, peroxisome, plasma membrane 61.46 63.5
KXG20331 Sorghum cytosol, peroxisome, plasma membrane 60.88 62.71
OQU76684 Sorghum nucleus, peroxisome, plasma membrane 60.58 62.59
OQU76683 Sorghum nucleus, peroxisome, plasma membrane 60.44 62.44
Zm00001d046537_P002 Maize nucleus, peroxisome, plasma membrane 60.73 61.54
Os06t0607700-01 Rice plasma membrane 61.46 61.19
TraesCS7A01G378500.2 Wheat cytosol, peroxisome, plasma membrane 61.61 61.07
TraesCS7B01G280300.2 Wheat cytosol, peroxisome, plasma membrane 61.75 61.04
HORVU7Hr1G090350.4 Barley cytosol, nucleus, plasma membrane 52.12 48.77
AT1G31770.1 Thale cress cytosol, nucleus, peroxisome 39.12 41.36
AT4G27420.1 Thale cress cytosol, peroxisome, plasma membrane 38.25 41.07
AT5G06530.1 Thale cress plasma membrane 42.19 38.48
AT1G71960.1 Thale cress cytosol, peroxisome, plasma membrane 36.79 38.07
AT3G25620.2 Thale cress cytosol, nucleus, plasma membrane, plastid 37.08 37.8
GSMUA_Achr1P19280_001 Banana plasma membrane 58.39 37.63
AT2G13610.1 Thale cress cytosol, peroxisome, plasma membrane 25.26 26.66
AT3G55100.1 Thale cress cytosol, peroxisome, plasma membrane 25.4 26.28
AT1G53270.1 Thale cress plasma membrane 22.48 26.1
AT5G52860.1 Thale cress cytosol, nucleus, plasma membrane, plastid 22.34 25.98
AT4G25750.1 Thale cress plasma membrane 21.17 25.13
AT5G13580.1 Thale cress cytosol, peroxisome, plasma membrane 26.13 24.62
AT5G19410.2 Thale cress plastid 22.63 24.49
AT3G55090.1 Thale cress cytosol, peroxisome, plasma membrane 26.13 24.32
AT3G53510.1 Thale cress plasma membrane 26.13 24.22
AT3G55130.1 Thale cress mitochondrion, peroxisome, plasma membrane 24.96 23.59
AT2G39350.1 Thale cress cytosol 25.4 23.51
AT2G01320.3 Thale cress peroxisome, plastid, vacuole 24.67 23.21
AT3G55110.1 Thale cress cytosol, peroxisome, plasma membrane 23.94 23.16
AT2G37360.1 Thale cress cytosol, peroxisome, plasma membrane 24.82 22.52
Protein Annotations
MapMan:21.8.2.1MapMan:24.1.3.2.2Gene3D:3.40.50.300EntrezGene:820512InterPro:AAA+_ATPaseInterPro:ABC_2_trans
InterPro:ABC_transporter-likeProteinID:AEE75312.1ArrayExpress:AT3G13220EnsemblPlantsGene:AT3G13220RefSeq:AT3G13220TAIR:AT3G13220
RefSeq:AT3G13220-TAIR-GEnsemblPlants:AT3G13220.1TAIR:AT3G13220.1ProteinID:BAB01414.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0006810GO:GO:0007275GO:GO:0008150GO:GO:0009555GO:GO:0009653
GO:GO:0009987GO:GO:0010152GO:GO:0010584GO:GO:0016020GO:GO:0016021GO:GO:0016043
GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085InterPro:IPR003439RefSeq:NP_187928.2
InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF01061PO:PO:0001078PO:PO:0007611PO:PO:0009010
PO:PO:0009031PO:PO:0009046PO:PO:0009071PO:PO:0025022PFscan:PS50893PANTHER:PTHR19241
PANTHER:PTHR19241:SF155UniProt:Q9LK50SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI00001633A1
Symbol:WBC27SEG:seg::::
Description
ABCG26ABC transporter G family member 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK50]
Coordinates
chr3:-:4247675..4250703
Molecular Weight (calculated)
77891.2 Da
IEP (calculated)
8.696
GRAVY (calculated)
-0.010
Length
685 amino acids
Sequence
(BLAST)
001: MEIRRSTEEV EENHVMQITG SNGIVHNMEF MPQAYLRNQY SSEIDIDEEF VSTYPLEDAP LPIFLKFEDV EYKVRNSHAS SANLVKTMVS KVVTHTNPDP
101: DGYKHILKGI TGSTGPGEIL ALMGPSGSGK TTLLKIMGGR LTDNVKGKLT YNDIPYSPSV KRRIGFVTQD DVLLPQLTVE ETLAFAAFLR LPSSMSKEQK
201: YAKIEMIIKE LGLERCRRTR VGGGFVKGIS GGERKRASIA YEILVDPSLL LLDEPTSGLD STSATKLLHI LQGVAKAGRT VITTIHQPSS RMFHMFDKLL
301: LISEGHPAFY GKARESMEYF SSLRILPEIA MNPAEFLLDL ATGQVSDISL PDELLAAKTA QPDSEEVLLK YLKQRYKTDL EPKEKEENHR NRKAPEHLQI
401: AIQVKKDWTL SWWDQFLILS RRTFRERRRD YFDKLRLVQS LGVAVVLGLL WWKSKTDTEA HLRDQVGLMF YICIFWTSSS LFGAVYVFPF EKIYLVKERK
501: AEMYRLSVYY VCSTLCDMVA HVLYPTFFMI IVYFMAEFNR NIPCFLFTVL TILLIAITSQ GAGEFLGASV LSIKRAGMIA SLVLMLFLLT GGYYVQHIPK
601: FMQWLKYLSF MHYGFRLLLK VQYSADQLFE CGSKGGCRTL QSSSSFDTIN LNGGLQELWV LLAMAFGYRL CAYFCLRKKI SICHL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.