Factsheet for TraesCS1B01G252600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G240600.1	Wheat	plasma membrane	96.32	96.32
TraesCS1A01G240500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	96.17	96.02
HORVU1Hr1G056890.2	Barley	cytosol	95.1	94.81
Zm00001d038068_P001	Maize	cytosol, peroxisome, plasma membrane	81.32	76.51
KXG21900	Sorghum	cytosol, peroxisome, plasma membrane	80.25	75.07
Os05t0384600-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	76.57	74.07
GSMUA_Achr2P06780_001	Banana	cytosol, peroxisome, plasma membrane, plastid	55.44	61.88
Bra002234.1-P	Field mustard	cytosol	42.73	58.12
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.28	57.58
CDY13996	Canola	plasma membrane	42.11	57.41
AT5G19410.2	Thale cress	plastid	53.29	54.98
KRG89682	Soybean	cytosol, nucleus, peroxisome	54.98	54.73
Solyc03g113690.1.1	Tomato	plastid	54.98	54.56
KRH50602	Soybean	plastid	54.67	54.5
CDX92533	Canola	plastid	52.22	54.21
PGSC0003DMT400062852	Potato	plastid	54.82	54.16
TraesCS3B01G251300.1	Wheat	plastid	41.19	44.46
TraesCS7B01G240900.1	Wheat	cytosol, peroxisome, plasma membrane	41.35	40.79
TraesCS2B01G612200.1	Wheat	plasma membrane	38.44	37.19
TraesCS3B01G047600.1	Wheat	cytosol, peroxisome, vacuole	34.15	33.04
TraesCS1B01G066000.1	Wheat	cytosol, peroxisome, plasma membrane	33.54	31.56
TraesCS5B01G087400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	32.62	31.28
TraesCS3B01G387500.1	Wheat	plastid	32.77	28.27
TraesCS3B01G285600.1	Wheat	cytosol, peroxisome, plasma membrane	30.63	28.01
TraesCS4B01G095200.1	Wheat	plastid	26.03	26.4
TraesCS4B01G200600.1	Wheat	cytosol, peroxisome, plasma membrane	31.39	25.88
TraesCS7B01G280300.2	Wheat	cytosol, peroxisome, plasma membrane	24.66	23.23
TraesCS3B01G017100.1	Wheat	extracellular, plasma membrane, vacuole	22.66	22.29
TraesCS5B01G203200.1	Wheat	cytosol	28.64	21.47
TraesCS4B01G272400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	24.35	20.92

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF158	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G252600	EnsemblPlants:TraesCS1B01G252600.1	SEG:seg	:

Description

No Description!

Coordinates

chr1B:-:445427211..445429172

Molecular Weight (calculated)

70743.9 Da

IEP (calculated)

8.247

GRAVY (calculated)

0.269

Length

653 amino acids

Sequence
(BLAST)

001: MDQDLSSELD PALLLSTSAS SSSPQDSASP SFSFYPPSPP EYTLAVTNLS CPAPRRANAG LLPRFLSSST PPAAEAEGLL NSVSFTASSS SILAVVGPSG
101: AGKSTLLRIL SGRGTGSEIA KPPTVRINGH AVTSRAQLRR TCGFVTQDDN LLPLLTVRET ILFAARFRLG SSVTARERHE RVEALMQELR LSEVADSYVG
201: GGGGEAMSSS RGVSGGERKR VSIAVDMVHD PPVLLLDEPT SGLDSRSAMD VLALLHEVAC ARRQVVVLSI HQPSYRMLGY ISSLLLLSRG AVAHCGSLRS
301: LEDALARLGH KIPAQLNPLE LAMEVIEQLQ ADHAKFAMLR DNDQYEEERE SPGVANGSLQ VPEHGYRSRA VEVAALTVRC WRTMYRTQQL FAARAAQAVV
401: GGLGLGSVFF RVRADPDGLA LRLGLFAFSL SFLLSSTVEA LPILLHERRV LMREASRRAY RLSSYVVANA LVFAPCLLAV AILFSAPVYW LVGLRASLAA
501: FGFFVLAVWL IVLMASSLVL FLSAVSPDFI LGNSLICIFL GVFFLFSGYF IPKESIPRYW AFMYYVSMYR YPLDLLLINE YGGSTSEKCV AWTGGDAMNG
601: DGVCLSTGGD VLRGRGVDEG MRWVNVGVML GFFLVYRIMC WAVLVRRASK TTL

Best Arabidopsis Sequence Match ( AT5G19410.2 )
(BLAST)

001: MKKNNNTHTM ASCFHPSAMA TSHREEDSII LFSASNSPDE FSSASSSFSS SPLPTPNRYS LTVTNLSYTI NHTPILNSVS LAAESSKILA VVGPSGTGKS
101: TLLKIISGRV NHKALDPSSA VLMNNRKITD YNQLRRLCGF VPQDDDLLPL LTVKETLMYS AKFSLRDSTA KEREERVESL LSDLGLVLVQ DSFVGEGDEE
201: DRGVSGGERK RVSIAVEMIR DPPILLLDEP TSGLDSRNSL QVVELLATMA KSKQRTVLFS IHQPSYRILD YISDYLILSR GSVIHLGSLE HLEDSIAKLG
301: FQIPEQLNPI EFAMEIVESL RTFKPNSVAV VESSSMWPEN NENDGIISKK EAFRVLDVTE ISYLCSRFCK IIYRTKQLFL ARTMQAVVAG LGLGSVYTRL
401: KRDEEGVAER LGLFAFSLSF LLSSTVEALP IYLRERRVLM KESSRGSYRI SSYMIANTIA FVPFLFVVSL LFSIPVYWIV GLNPSIQAFS FFVLCVWLII
501: LMASSLVLFL SAVSPDFISG NSLICTVLGA FFLFSGYFIP KEKIPKPWMF MYYVSLYRYP LESMVVNEYW SMREECFSSG NMGCLMTGED VLKERGLDKD
601: TRWINVGIML AFFVFYRILC WGILLRKASK STH

Arabidopsis Description

ABC-2 type transporter family protein [Source:TAIR;Acc:AT5G19410]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.