Factsheet for TraesCS3D01G019000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G026500.1	Wheat	extracellular, plasma membrane, vacuole	97.75	97.75
TraesCS3B01G017100.1	Wheat	extracellular, plasma membrane, vacuole	97.0	97.29
HORVU3Hr1G005830.3	Barley	cytosol	54.5	96.03
Os01t0121700-01	Rice	plasma membrane	90.24	89.97
EES00402	Sorghum	endoplasmic reticulum, golgi, plasma membrane	87.84	88.1
Zm00001d008512_P002	Maize	golgi, plasma membrane, vacuole	87.39	83.74
HORVU3Hr1G005770.1	Barley	endoplasmic reticulum	44.74	78.01
GSMUA_Achr10P...	Banana	plasma membrane	76.88	76.42
Solyc05g008350.2.1	Tomato	nucleus, plastid	71.62	67.18
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	71.92	66.25
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	72.07	65.84
KRH35792	Soybean	plasma membrane	71.47	65.66
AT2G01320.3	Thale cress	peroxisome, plastid, vacuole	71.47	65.38
KRG90976	Soybean	plasma membrane	69.67	64.9
CDY37372	Canola	cytosol, peroxisome, plasma membrane	71.02	64.53
CDY40385	Canola	cytosol, peroxisome, plasma membrane	71.02	64.18
Bra014326.1-P	Field mustard	cytosol, peroxisome, plasma membrane	70.87	64.04
TraesCS4D01G092000.1	Wheat	plasma membrane	27.78	28.55
TraesCS7D01G067300.1	Wheat	cytosol, nucleus, plasma membrane, plastid	26.88	26.06
TraesCS7D01G375300.1	Wheat	cytosol, peroxisome, plasma membrane	25.68	25.79
TraesCS3D01G231500.1	Wheat	mitochondrion, plastid	22.82	25.12
TraesCS1D01G052000.1	Wheat	cytosol, peroxisome, plasma membrane	25.53	24.57
TraesCS5D01G093600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	25.08	24.52
TraesCS4D01G271500.1	Wheat	plastid	27.48	24.34
TraesCS2D01G585300.1	Wheat	plasma membrane	24.32	24.04
TraesCS3D01G348400.1	Wheat	plasma membrane, plastid	26.28	23.15
TraesCS7D01G337600.1	Wheat	cytosol, peroxisome, plasma membrane	22.82	22.96
TraesCS1D01G240600.1	Wheat	plasma membrane	21.62	22.05
TraesCS3D01G254600.1	Wheat	cytosol, peroxisome, plasma membrane	22.97	21.22
TraesCS4D01G201700.1	Wheat	mitochondrion, plasma membrane, plastid	25.68	20.33
TraesCS5D01G211000.1	Wheat	cytosol	25.23	19.09

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF262
SMART:SM00382	SUPFAM:SSF52540	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G019000	EnsemblPlants:TraesCS3D01G019000.1
TIGR:cd03213	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:6409250..6414920

Molecular Weight (calculated)

73001.3 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.050

Length

666 amino acids

Sequence
(BLAST)

001: MEIKGLGQLL AALAAALFLR VVAAGAGPAL LPPAEEEEED AEAGEGGGGG GVRPVAIRWA RITCALKNKR GDMARFLLSN LSGEAKPGRL LALMGPSGSG
101: KTTLLNVLAG QLAASPSLHL SGFLYVNGQP MSQGGYKIAY VRQEDIFFSQ LTVRETLSLA AELQLPDTMS PERKEKYVND LLFRLGLVNS ADSIVGDAKV
201: RGISGGEKKR LSLACELIAS PSVIFADEPT TGLDAFQAEK VMETLRQLAE DGHTVICSIH QPRGSVYSKF DDIVLLSEGE VVYMGPAKEE PLKYFASLGY
301: QCPDHENPAE FLADLISTDY SSAESVQSSQ KRIENLIDEF TNKVLITEFN SPVTQSEGSE FSTKLAQKST RKQRRGWWRQ FRLLFKRAWM QAFRDGPTNK
401: VRARMSVASA IIFGSVFWRM GKTQTSIQDR MGLLQVAAIN TAMAALTKTV GVFPKERAIV DRERAKGSYA LGPYLSSKLL AEIPIGAAFP LIFGSILYPM
501: AKLHPTISRF AKFCGIVTVE SFAASAMGLT VGAIAPTTEA AMALGPSLMT VFIVFGGYYV NPDNTPVIFR WIPKASLIRW AFQGLCINEF KGLQFEHQHS
601: YDVQTGEQAL ERFSLGGIRI ADTLAAQGRI LMFWYWLTYL LLKKNKPRYQ QLLPPSEEDQ SKQQTE

Best Arabidopsis Sequence Match ( AT2G01320.3 )
(BLAST)

001: MAPFGGKSLA DVVSGIGGNG VGGALAAVAA ALLVRLFAGP GIALLPEDEA EDDYAETEDG GGDSIRPVTI RWRNITCSLS DKSSKSVRFL LKNVSGEAKP
101: GRLLAIMGPS GSGKTTLLNV LAGQLSLSPR LHLSGLLEVN GKPSSSKAYK LAFVRQEDLF FSQLTVRETL SFAAELQLPE ISSAEERDEY VNNLLLKLGL
201: VSCADSCVGD AKVRGISGGE KKRLSLACEL IASPSVIFAD EPTTGLDAFQ AEKVMETLQK LAQDGHTVIC SIHQPRGSVY AKFDDIVLLT EGTLVYAGPA
301: GKEPLTYFGN FGFLCPEHVN PAEFLADLIS VDYSSSETVY SSQKRVHALV DAFSQRSSSV LYATPLSMKE ETKNGMRPRR KAIVERTDGW WRQFFLLLKR
401: AWMQASRDGP TNKVRARMSV ASAVIFGSVF WRMGKSQTSI QDRMGLLQVA AINTAMAALT KTVGVFPKER AIVDRERSKG SYSLGPYLLS KTIAEIPIGA
501: AFPLMFGAVL YPMARLNPTL SRFGKFCGIV TVESFAASAM GLTVGAMVPS TEAAMAVGPS LMTVFIVFGG YYVNADNTPI IFRWIPRASL IRWAFQGLCI
601: NEFSGLKFDH QNTFDVQTGE QALERLSFGG RRIRETIAAQ SRILMFWYSA TYLLLEKNKP KYQKLELLVD NGETGNSGVQ LDKAEVDQTE KPEDDDINQP
701: LDDQNQTSDS DDELDEIRPF VLEAGSKV

Arabidopsis Description

ABCG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSW5]
SUBAcon: [peroxisome,plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.