Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX71989 | |
| CDX74120 | |
| CDX74867 | |
| CDX76119 | |
| CDX77145 | |
| CDX79070 | |
| CDX80511 | |
| CDX80516 | |
| CDX80828 | |
| CDX82264 | |
| CDX82833 | |
| CDX87437 | |
| CDX88180 | |
| CDX88475 | |
| CDX96631 | endoplasmic reticulum |
| CDX98240 | |
| CDY04835 | |
| CDY05493 | |
| CDY06071 | |
| CDY06219 | |
| CDY06464 | |
| CDY06653 | |
| CDY08664 | |
| CDY09966 | |
| CDY10211 | |
| CDY10442 | |
| CDY10563 | |
| CDY12300 | |
| CDY14051 | |
| CDY18835 | |
| CDY19801 | |
| CDY20922 | |
| CDY22476 | |
| CDY24564 | |
| CDY25160 | |
| CDY25374 | |
| CDY29224 | |
| CDY29520 | endoplasmic reticulum |
| CDY30292 | |
| CDY30517 | |
| CDY30835 | |
| CDY31481 | endoplasmic reticulum |
| CDY33444 | |
| CDY33634 | endoplasmic reticulum |
| CDY34315 | |
| CDY35917 | |
| CDY36063 | |
| CDY36901 | |
| CDY37656 | |
| CDY40364 | |
| CDY40468 | |
| CDY42227 | |
| CDY44628 | |
| CDY44976 | |
| CDY47689 | |
| CDY47916 | |
| CDY49157 | |
| CDY49990 | |
| CDY50950 | |
| CDY53538 | |
| CDY54909 | |
| CDY55173 | |
| CDY55544 | |
| CDY58069 | |
| CDY58070 | |
| CDY65003 | |
| CDY70805 | |
| CDY71046 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51550 | Canola | nucleus | 97.13 | 96.92 |
| Bra000756.1-P | Field mustard | nucleus | 98.9 | 95.32 |
| CDY71065 | Canola | cytosol | 20.09 | 88.35 |
| CDX94473 | Canola | nucleus | 92.05 | 88.35 |
| CDX86737 | Canola | nucleus | 91.17 | 86.95 |
| AT4G11920.1 | Thale cress | nucleus | 84.33 | 80.42 |
| CDY10820 | Canola | nucleus, plastid | 77.04 | 74.26 |
| CDY41283 | Canola | nucleus, plastid | 77.04 | 74.1 |
| VIT_02s0025g04680.t01 | Wine grape | cytosol, nucleus, plastid | 70.64 | 70.8 |
| KRH57275 | Soybean | nucleus | 70.2 | 69.28 |
| CDX94136 | Canola | nucleus, plastid | 57.84 | 68.59 |
| KRH77460 | Soybean | nucleus, plastid | 67.77 | 66.88 |
| GSMUA_Achr11P... | Banana | plastid | 68.21 | 63.58 |
| KRH04001 | Soybean | mitochondrion | 71.08 | 61.22 |
| GSMUA_Achr11P... | Banana | plastid | 63.8 | 58.86 |
| TraesCS4D01G341200.1 | Wheat | nucleus, plastid | 66.23 | 58.59 |
| TraesCS4B01G346200.2 | Wheat | nucleus, plastid | 66.23 | 58.48 |
| KRH27985 | Soybean | nucleus, plastid | 58.5 | 58.37 |
| Zm00001d027430_P001 | Maize | plastid | 66.23 | 58.37 |
| Zm00001d048472_P001 | Maize | nucleus, plastid | 66.23 | 57.69 |
| CDY71640 | Canola | nucleus, plastid | 30.24 | 57.08 |
| Os03t0123300-01 | Rice | plastid | 65.56 | 56.79 |
| CDX70523 | Canola | plastid | 58.5 | 56.62 |
| CDX78541 | Canola | plastid | 58.28 | 56.41 |
| TraesCS1B01G166800.1 | Wheat | cytosol | 52.1 | 55.79 |
| TraesCS7B01G353500.1 | Wheat | plastid | 49.67 | 55.56 |
| HORVU4Hr1G084710.1 | Barley | cytosol, mitochondrion | 66.45 | 53.46 |
| CDY59111 | Canola | nucleus | 23.4 | 49.07 |
| CDY26774 | Canola | mitochondrion | 11.48 | 47.27 |
| CDY04804 | Canola | mitochondrion, plastid | 15.89 | 45.0 |
| OQU93351 | Sorghum | nucleus | 67.11 | 43.68 |
| CDY71694 | Canola | nucleus | 15.45 | 40.46 |
| CDY28289 | Canola | cytosol, extracellular, mitochondrion, plastid | 17.22 | 40.41 |
| CDY13491 | Canola | cytosol | 32.23 | 39.67 |
| CDY59110 | Canola | nucleus | 34.88 | 37.71 |
| CDY59109 | Canola | nucleus | 34.88 | 37.71 |
| CDY52543 | Canola | nucleus | 35.54 | 37.62 |
| CDX75343 | Canola | nucleus | 30.46 | 37.0 |
| CDX68960 | Canola | nucleus | 32.23 | 35.35 |
| CDY44519 | Canola | cytosol, nucleus | 34.22 | 29.87 |
| CDX98239 | Canola | nucleus | 7.51 | 25.37 |
| CDY46124 | Canola | cytosol | 30.02 | 21.94 |
| CDY28290 | Canola | cytosol, mitochondrion, nucleus | 6.62 | 20.55 |
| CDX75342 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:13.3.4.1.3 | Gene3D:2.130.10.10 | EnsemblPlants:CDX90811 | ProteinID:CDX90811 | ProteinID:CDX90811.1 | InterPro:Cdc20/Fizzy |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0051488 | GO:GO:0097027 |
| GO:GO:1904668 | EnsemblPlantsGene:GSBRNA2T00151520001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF31 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EE745E | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
BnaA03g24910D
Coordinates
chrLK031864:-:671708..674408
Molecular Weight (calculated)
50276.1 Da
IEP (calculated)
8.756
GRAVY (calculated)
-0.496
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEEEDPSS SSSQLNLPPS MNRPTVSLET QRINRLIHSD HYHSPSKPIY SDRFIPSPSG SNFALFGLEP SPKDGKEDGP GSYAGMLRTV LFEPETPEKR
101: DVVTGFSPSS RNIFRYKTET QRPVNSFPPF GCDEGPSVSR SPVKPPRNIL KSAYKVLDAP ALQDDFYLNL VDWSAQNVTK LCDLGGDESV CSVSWALRGT
201: HLAIGTSSGT VEIWDALRCR RIRTMGGHRL RVGALAWSSS VLSSGSRDKK ILQRDIRSQE DHVSKLTGHR SEVCGLKWSY DNRELASGGN DNKLLVWNQH
301: STQPVLRYCE HTAAVKAIAW SPHIHGLLAS GGGTADRCIR FWNTTTNTRL SCVDTNSQVC NLAWSKNVNE LVSTHGYSQN QIIVWKYPTM SKLATLTGHT
401: FRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQRRES GIGALYFGRT TIR
101: DVVTGFSPSS RNIFRYKTET QRPVNSFPPF GCDEGPSVSR SPVKPPRNIL KSAYKVLDAP ALQDDFYLNL VDWSAQNVTK LCDLGGDESV CSVSWALRGT
201: HLAIGTSSGT VEIWDALRCR RIRTMGGHRL RVGALAWSSS VLSSGSRDKK ILQRDIRSQE DHVSKLTGHR SEVCGLKWSY DNRELASGGN DNKLLVWNQH
301: STQPVLRYCE HTAAVKAIAW SPHIHGLLAS GGGTADRCIR FWNTTTNTRL SCVDTNSQVC NLAWSKNVNE LVSTHGYSQN QIIVWKYPTM SKLATLTGHT
401: FRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQRRES GIGALYFGRT TIR
001: MEEDESTTPK KKSDSQLNLP PSMNRPTVSL ESRINRLIDS NHYHSPSKPI YSDRFIPSRS GSNFALFDLA SSSPNKKDGK EDGAGSYASL LKTALFGPVT
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR
Arabidopsis Description
FZR1Protein FIZZY-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.