CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73850
CDX74120
CDX82264
CDY01062
CDY08491
CDY18835
CDY24564
CDY25374
CDY33444
CDY35917
CDY36063
CDY40468
CDY42227
CDY49990
CDY53919
CDY67306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26900.1	CDY35917	AT2G20000.1	17944809
AT5G26900.1	CDY40468	AT2G20000.1	17944809
AT5G27080.1	CDX73850	AT3G11830.1	20706207
AT5G27080.1	CDY01062	AT3G11830.1	20706207
AT5G27080.1	CDY08491	AT3G11830.1	20706207
AT5G27080.1	CDY53919	AT3G11830.1	20706207
AT5G27080.1	CDY67306	AT3G11830.1	20706207
AT5G27080.1	CDX82264	AT3G20050.1	20706207
AT5G27080.1	CDY24564	AT3G20050.1	20706207
AT5G27080.1	CDY25374	AT3G20050.1	20706207
AT5G27080.1	CDY33444	AT3G20050.1	20706207
AT5G27080.1	CDY36063	AT3G20050.1	20706207
AT5G27080.1	CDY42227	AT3G20050.1	20706207
AT5G27080.1	CDX74120	AT5G26360.1	20706207
AT5G27080.1	CDY18835	AT5G26360.1	20706207
AT5G27080.1	CDY49990	AT5G26360.1	20706207
AT5G27570.1	CDY35917	AT2G20000.1	17944809
AT5G27570.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59109	Canola	nucleus	100.0	100.0
CDY52543	Canola	nucleus	96.66	94.63
Bra005544.1-P	Field mustard	nucleus	94.75	90.43
CDY59111	Canola	nucleus	44.63	86.57
CDX75343	Canola	nucleus	63.48	71.31
CDY71694	Canola	nucleus	29.12	70.52
CDX68960	Canola	nucleus	69.21	70.22
CDY13491	Canola	cytosol	61.34	69.84
CDY26774	Canola	mitochondrion	17.66	67.27
AT5G27080.1	Thale cress	nucleus	65.63	62.22
AT5G27570.1	Thale cress	nucleus	66.35	61.78
AT5G26900.1	Thale cress	nucleus	65.16	61.49
KRH68047	Soybean	nucleus	66.11	60.61
KRH44738	Soybean	nucleus	63.48	60.18
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	26.97	58.55
Solyc08g005420.2.1	Tomato	nucleus	62.29	58.26
KRG94456	Soybean	cytosol	32.22	57.45
PGSC0003DMT400047585	Potato	nucleus	61.1	57.14
GSMUA_Achr1P27670_001	Banana	cytosol	7.64	50.79
CDY44519	Canola	cytosol, nucleus	61.1	49.33
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	50.36	49.3
CDX98239	Canola	nucleus	15.27	47.76
KRH07005	Soybean	nucleus	13.84	46.77
GSMUA_AchrUn_...	Banana	cytosol	26.25	46.03
GSMUA_Achr3P21370_001	Banana	cytosol	42.96	45.34
GSMUA_AchrUn_...	Banana	nucleus	43.91	44.77
CDY28290	Canola	cytosol, mitochondrion, nucleus	15.51	44.52
GSMUA_Achr1P27660_001	Banana	mitochondrion	16.95	44.1
GSMUA_Achr1P25940_001	Banana	cytosol	31.03	43.77
GSMUA_AchrUn_...	Banana	cytosol	8.83	42.53
GSMUA_Achr1P28050_001	Banana	cytosol	40.81	42.01
GSMUA_AchrUn_...	Banana	cytosol	36.28	41.76
CDY46124	Canola	cytosol	61.58	41.61
CDY71065	Canola	cytosol	10.02	40.78
GSMUA_AchrUn_...	Banana	cytosol	28.64	39.34
CDX78541	Canola	plastid	40.81	36.54
CDX70523	Canola	plastid	40.57	36.32
CDX94473	Canola	nucleus	39.62	35.17
CDX90811	Canola	nucleus	37.71	34.88
GSMUA_AchrUn_...	Banana	cytosol	23.63	34.62
CDX86737	Canola	nucleus	39.14	34.53
CDY51550	Canola	nucleus	37.23	34.36
CDY10820	Canola	nucleus, plastid	38.19	34.04
CDY41283	Canola	nucleus, plastid	38.19	33.97
CDX94136	Canola	nucleus, plastid	29.59	32.46
CDY04804	Canola	mitochondrion, plastid	11.93	31.25
CDY71640	Canola	nucleus, plastid	13.37	23.33
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	UniProt:A0A078J4T4	InterPro:Apc4_WD40_dom	ProteinID:CDY59109.1	EnsemblPlants:CDY59110
ProteinID:CDY59110	ProteinID:CDY59110.1	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0030234	GO:GO:0051488	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00025564001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEA344
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaCnng34300DBnaCnng34290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4T4]

Coordinates

chrLK033726:-:28294..29616

Molecular Weight (calculated)

46507.0 Da

IEP (calculated)

9.712

GRAVY (calculated)

-0.492

Length

419 amino acids

Sequence
(BLAST)

001: MNAGMNWKEH GRKIPKENLD RFIPNRSAMD FDFAHHALTE ALIEARDGKK KEARELSPSK EAYRKRLAET LGLNRTRILA FRNKPQPPLH SHYHSASLHQ
101: QPLKPRRRRI PQSCSKVLDA PNILDDFYLN LLDWGSRNVL AIALGHTLCL WDASTGSVSE FVTIEEDQGP ITSISWAPDG SHVALGLNNS QVQLWDSSSI
201: RKIRTLNGVH HSRVGSLAWN NHILTTGGMD GKIINNDVRI RSHVVDTYRG HTGEICGLKW SGSGMQLASG GNDNVVHVWD RSSASSRWLH RLEEHTSAVK
301: ALAWCPFQSN LLATGGGGTD GAIKFWNTHT GACLNSVDTG SQNHLALWKY PSLVKMAELT GHTSRVLYMT QSPDGSTVAS AAGDESLRFW DVFGMPETAK
401: KPDQKAAAHE PFSRVPRIR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.