CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73850
CDX74120
CDX82264
CDY01062
CDY08491
CDY18835
CDY24564
CDY25374
CDY33444
CDY35917
CDY36063
CDY40468
CDY42227
CDY49990
CDY53919
CDY67306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26900.1	CDY35917	AT2G20000.1	17944809
AT5G26900.1	CDY40468	AT2G20000.1	17944809
AT5G27080.1	CDX73850	AT3G11830.1	20706207
AT5G27080.1	CDY01062	AT3G11830.1	20706207
AT5G27080.1	CDY08491	AT3G11830.1	20706207
AT5G27080.1	CDY53919	AT3G11830.1	20706207
AT5G27080.1	CDY67306	AT3G11830.1	20706207
AT5G27080.1	CDX82264	AT3G20050.1	20706207
AT5G27080.1	CDY24564	AT3G20050.1	20706207
AT5G27080.1	CDY25374	AT3G20050.1	20706207
AT5G27080.1	CDY33444	AT3G20050.1	20706207
AT5G27080.1	CDY36063	AT3G20050.1	20706207
AT5G27080.1	CDY42227	AT3G20050.1	20706207
AT5G27080.1	CDX74120	AT5G26360.1	20706207
AT5G27080.1	CDY18835	AT5G26360.1	20706207
AT5G27080.1	CDY49990	AT5G26360.1	20706207
AT5G27570.1	CDY35917	AT2G20000.1	17944809
AT5G27570.1	CDY40468	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008327.1-P	Field mustard	cytosol, mitochondrion	74.95	90.89
CDY26774	Canola	mitochondrion	15.99	75.45
CDY59111	Canola	nucleus	29.09	69.91
CDY13491	Canola	cytosol	47.4	66.85
CDY52543	Canola	nucleus	51.25	62.15
CDX75343	Canola	nucleus	43.93	61.13
CDY59110	Canola	nucleus	49.33	61.1
CDY59109	Canola	nucleus	49.33	61.1
CDX68960	Canola	nucleus	47.59	59.81
AT5G27080.1	Thale cress	nucleus	50.87	59.73
AT5G26900.1	Thale cress	nucleus	50.87	59.46
CDY71694	Canola	nucleus	19.65	58.96
AT5G27570.1	Thale cress	nucleus	51.06	58.89
KRG94456	Soybean	cytosol	25.82	57.02
Solyc08g005420.2.1	Tomato	nucleus	48.75	56.47
KRH44738	Soybean	nucleus	47.4	55.66
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	20.62	55.44
PGSC0003DMT400047585	Potato	nucleus	47.78	55.36
KRH68047	Soybean	nucleus	48.55	55.14
GSMUA_Achr1P27670_001	Banana	cytosol	6.55	53.97
GSMUA_AchrUn_...	Banana	cytosol	8.86	52.87
GSMUA_Achr1P27660_001	Banana	mitochondrion	15.99	51.55
GSMUA_AchrUn_...	Banana	cytosol	23.31	50.63
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	39.88	48.36
GSMUA_Achr1P25940_001	Banana	cytosol	27.55	48.15
CDY71065	Canola	cytosol	9.25	46.6
GSMUA_Achr3P21370_001	Banana	cytosol	35.26	46.1
GSMUA_AchrUn_...	Banana	cytosol	31.79	45.33
GSMUA_AchrUn_...	Banana	nucleus	35.84	45.26
GSMUA_Achr1P28050_001	Banana	cytosol	35.07	44.72
GSMUA_AchrUn_...	Banana	cytosol	25.63	43.61
KRH07005	Soybean	nucleus	10.21	42.74
CDY28290	Canola	cytosol, mitochondrion, nucleus	11.18	39.73
CDX78541	Canola	plastid	34.49	38.25
CDX70523	Canola	plastid	34.3	38.03
CDY46124	Canola	cytosol	45.09	37.74
CDY10820	Canola	nucleus, plastid	32.76	36.17
CDY41283	Canola	nucleus, plastid	32.76	36.09
CDX94473	Canola	nucleus	32.76	36.02
CDX98239	Canola	nucleus	9.25	35.82
CDX86737	Canola	nucleus	32.76	35.79
GSMUA_AchrUn_...	Banana	cytosol	19.08	34.62
CDX90811	Canola	nucleus	29.87	34.22
CDY51550	Canola	nucleus	29.87	34.14
CDX94136	Canola	nucleus, plastid	24.28	32.98
CDY04804	Canola	mitochondrion, plastid	9.83	31.88
CDY71640	Canola	nucleus, plastid	10.98	23.75
CDX75342	Canola	cytosol	2.31	5.36

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	UniProt:A0A078I4V8	InterPro:Apc4_WD40_dom	EnsemblPlants:CDY44519	ProteinID:CDY44519
ProteinID:CDY44519.1	InterPro:Cdc20/Fizzy	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0030234	GO:GO:0051488	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00080293001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE37D0
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaCnng11300DBnaCnng11300D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078I4V8]

Coordinates

chrLK032593:+:2..2214

Molecular Weight (calculated)

57472.7 Da

IEP (calculated)

8.370

GRAVY (calculated)

-0.425

Length

519 amino acids

Sequence
(BLAST)

001: QFDRFIPNRA AMDFDYAHLA LMEEEEEEVS SSRKAYRKQL AETMGLNRTR ILAFTNKPPS TSSLQHQHQH QPPRRIPQRP ERTLDAPGLV DDFYLNVLDW
101: SSANVLAVAL ANSVCLWDAS TGSVTTLVTY GEDQGPVTSL NWAHDGINLG VGLNNGQVHI WDCVTKTLLR TLQGFHHTRV GSLAWNTHIL TTGGMDGRIF
201: NNDVRFMSYP VSTYKGHTQE VCGLKWSGSG QQLASGGNDR LVHIWDRSTS TQWLHRLRGH TSAVKALAWC PFQSDLLASG GGAEDRKIKF WNTRTGACLN
301: SLDTASQVSS LLWSNNQREL LCSHGSQLTL WKYPSMVKMA ELSGHTSRVL SMTQSPDGCT VVSAAGDENL CFWNVFGLPH TTAKKTVPKA AHEPFSHGSR
401: SKISAPIPAR LCLQESSHYR TCKTGTWQAT NNRGCDARSS SVIGSDVVLL PQIGNKLLID VARVIFREKH KVGEPSETTV TNEPDGKSEY AHSQDQHGET
501: RTRLRSLVTA WKLELTAVS

Best Arabidopsis Sequence Match ( AT5G27570.1 )
(BLAST)

001: MMNTSSHLKA QASCPLVEHF LRRKLSKENF DRFIPNRSAM DFDFANYALT QGRKRNVDEV TSASRKAYMT QLAEAMNQNR TRILAFRNKP KALLSSNHSD
101: PPHQQPISVK PRRYIPQNSE RVLDAPGIAD DFYLNLLDWG SSNVLAIALG DTVYLWDASS GSTYKLVTID EEEGPVTSIN WTQDGLDLAI GLDNSEVQLW
201: DCVSNRQVRT LRGGHESRVG SLAWNNHILT TGGMDGKIVN NDVRIRSSIV ETYLGHTEEV CGLKWSESGK KLASGGNDNV VHIWDHRSVA SSNPTRQWLH
301: RFEEHTAAVR ALAWCPFQAS LLATGGGVGD GKIKFWNTHT GACLNSVETG SQVCSLLWSK SERELLSSHG FTQNQLTLWK YPSMVKMAEL NGHTSRVLFM
401: AQSPDGCTVA SAAGDETLRL WNVFGEPPKT TKKAASKKYT DPFAHVNHIR

Arabidopsis Description

CDC20-5Transducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G27570]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.