CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71989
CDX72452
CDX74120
CDX74867
CDX75404
CDX76264
CDX77145
CDX79070
CDX79885
CDX80511
CDX80516
CDX80828
CDX82264
CDX82833
CDX84002
CDX87437
CDX88180
CDX88475
CDX91702
CDX91703
CDX96631	endoplasmic reticulum
CDX98240
CDY04740
CDY04835
CDY05493
CDY06071
CDY06219
CDY06464
CDY06653
CDY08664
CDY09966
CDY10211
CDY10442
CDY10563
CDY18835
CDY19801
CDY21421
CDY22476
CDY23390
CDY24564
CDY25374
CDY29520	endoplasmic reticulum
CDY30292
CDY30431
CDY30517
CDY30835
CDY31481	endoplasmic reticulum
CDY31791
CDY31792
CDY33444
CDY33634	endoplasmic reticulum
CDY35917
CDY36063
CDY36901
CDY40364
CDY40468
CDY41458
CDY42227
CDY44628
CDY44976
CDY45291
CDY49277
CDY49701
CDY49990
CDY51765
CDY52027
CDY52774
CDY53501
CDY53538
CDY54909
CDY55544
CDY57743
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13840.1	CDY06219	AT1G06590.1	20706207
AT5G13840.1	CDY06653	AT1G06590.1	20706207
AT5G13840.1	CDY09966	AT1G06590.1	20706207
AT5G13840.1	CDY10211	AT1G06590.1	20706207
AT5G13840.1	CDX84002	AT1G14810.1	20706207
AT5G13840.1	CDY45291	AT1G14810.1	20706207
AT5G13840.1	CDY51765	AT1G14810.1	20706207
AT5G13840.1	CDY52027	AT1G14810.1	20706207
AT5G13840.1	CDX96631	AT1G20610.1	20407024
AT5G13840.1	CDY29520	AT1G20610.1	20407024
AT5G13840.1	CDY31481	AT1G20610.1	20407024
AT5G13840.1	CDY33634	AT1G20610.1	20407024
AT5G13840.1	CDX91702	AT1G23190.1	20706207
AT5G13840.1	CDX91703	AT1G23190.1	20706207
AT5G13840.1	CDY04740	AT1G23190.1	20706207
AT5G13840.1	CDY21421	AT1G23190.1	20706207
AT5G13840.1	CDY41458	AT1G23190.1	20706207
AT5G13840.1	CDX87437	AT1G78770.1	20706207
AT5G13840.1	CDX88475	AT1G78770.1	20706207
AT5G13840.1	CDY10563	AT1G78770.1	20706207
AT5G13840.1	CDY04835	AT2G04660.1	20706207
AT5G13840.1	CDY30292	AT2G04660.1	20706207
AT5G13840.1	CDY30835	AT2G04660.1	20706207
AT5G13840.1	CDY35917	AT2G20000.1	17944809
AT5G13840.1	CDY40468	AT2G20000.1	17944809
AT5G13840.1	CDY35917	AT2G20000.1	20706207
AT5G13840.1	CDY40468	AT2G20000.1	20706207
AT5G13840.1	CDX77145	AT2G27970.1	20706207
AT5G13840.1	CDY30517	AT2G27970.1	20706207
AT5G13840.1	CDX74867	AT2G39090.1	20706207
AT5G13840.1	CDY06464	AT2G39090.1	20706207
AT5G13840.1	CDY44628	AT2G39090.1	20706207
AT5G13840.1	CDY53538	AT2G39090.1	20706207
AT5G13840.1	CDX79885	AT2G42260.1	20706207
AT5G13840.1	CDY53501	AT2G42260.1	20706207
AT5G13840.1	CDX82264	AT3G20050.1	20706207
AT5G13840.1	CDY24564	AT3G20050.1	20706207
AT5G13840.1	CDY25374	AT3G20050.1	20706207
AT5G13840.1	CDY33444	AT3G20050.1	20706207
AT5G13840.1	CDY36063	AT3G20050.1	20706207
AT5G13840.1	CDY42227	AT3G20050.1	20706207
AT5G13840.1	CDY23390	AT3G29800.1	20706207
AT5G13840.1	CDY30431	AT3G29800.1	20706207
AT5G13840.1	CDY49701	AT3G29800.1	20706207
AT5G13840.1	CDY52774	AT3G29800.1	20706207
AT5G13840.1	CDY36901	AT3G48150.1	20706207
AT5G13840.1	CDY44976	AT3G48150.1	20706207
AT5G13840.1	CDY58069	AT3G48150.1	20706207
AT5G13840.1	CDY58070	AT3G48150.1	20706207
AT5G13840.1	CDY70805	AT3G48150.1	20706207
AT5G13840.1	CDX71989	AT3G57860.1	20706207
AT5G13840.1	CDX98240	AT3G57860.1	20706207
AT5G13840.1	CDY06071	AT3G57860.1	20706207
AT5G13840.1	CDY08664	AT3G57860.1	20706207
AT5G13840.1	CDY22476	AT3G57860.1	20706207
AT5G13840.1	CDX79070	AT4G21530.1	20706207
AT5G13840.1	CDX82833	AT4G21530.1	20706207
AT5G13840.1	CDX72452	AT4G34150.1	20706207
AT5G13840.1	CDX75404	AT4G34150.1	20706207
AT5G13840.1	CDX76264	AT4G34150.1	20706207
AT5G13840.1	CDY31791	AT4G34150.1	20706207
AT5G13840.1	CDY31792	AT4G34150.1	20706207
AT5G13840.1	CDY49277	AT4G34150.1	20706207
AT5G13840.1	CDY57743	AT4G34150.1	20706207
AT5G13840.1	CDX80828	AT5G02530.1	20706207
AT5G13840.1	CDY10442	AT5G02530.1	20706207
AT5G13840.1	CDY40364	AT5G02530.1	20706207
AT5G13840.1	CDY55544	AT5G02530.1	20706207
AT5G13840.1	CDX80511	AT5G25460.1	20706207
AT5G13840.1	CDX80516	AT5G25460.1	20706207
AT5G13840.1	CDX88180	AT5G25460.1	20706207
AT5G13840.1	CDY05493	AT5G25460.1	20706207
AT5G13840.1	CDY19801	AT5G25460.1	20706207
AT5G13840.1	CDY54909	AT5G25460.1	20706207
AT5G13840.1	CDX74120	AT5G26360.1	20706207
AT5G13840.1	CDY18835	AT5G26360.1	20706207
AT5G13840.1	CDY49990	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70523	Canola	plastid	99.79	99.79
Bra006219.1-P	Field mustard	plastid	99.79	96.09
AT5G13840.1	Thale cress	plastid	96.15	93.56
VIT_13s0019g01840.t01	Wine grape	plastid	82.05	81.53
CDY71065	Canola	cytosol	17.52	79.61
KRG97899	Soybean	plastid	82.48	78.94
KRH30985	Soybean	plastid	84.19	78.8
PGSC0003DMT400076326	Potato	nucleus, plastid	81.62	76.1
Solyc06g043150.2.1	Tomato	nucleus, plastid	80.56	75.55
GSMUA_Achr5P07090_001	Banana	plastid	71.15	73.35
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	71.58	70.08
TraesCS3D01G533000.1	Wheat	plastid	72.22	69.98
EES02145	Sorghum	plastid	72.01	69.92
TraesCS3B01G595600.1	Wheat	plastid	72.44	69.9
TraesCS3A01G527600.1	Wheat	plastid	72.01	69.2
Zm00001d041957_P004	Maize	plastid	71.15	68.66
CDY10820	Canola	nucleus, plastid	60.26	60.0
CDY41283	Canola	nucleus, plastid	60.26	59.87
CDX94473	Canola	nucleus	59.62	59.11
CDX86737	Canola	nucleus	59.83	58.95
CDX90811	Canola	nucleus	56.41	58.28
CDY51550	Canola	nucleus	55.98	57.71
HORVU3Hr1G115170.1	Barley	cytosol, mitochondrion, nucleus, plastid	71.79	57.24
CDX94136	Canola	nucleus, plastid	45.51	55.76
CDY26774	Canola	mitochondrion	12.18	51.82
CDY59111	Canola	nucleus	23.29	50.46
CDY71640	Canola	nucleus, plastid	22.86	44.58
CDY13491	Canola	cytosol	34.4	43.75
CDY04804	Canola	mitochondrion, plastid	14.53	42.5
CDY71694	Canola	nucleus	15.17	41.04
CDX75343	Canola	nucleus	32.69	41.02
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	16.88	40.93
CDY52543	Canola	nucleus	37.39	40.89
CDY59110	Canola	nucleus	36.54	40.81
CDY59109	Canola	nucleus	36.54	40.81
CDX68960	Canola	nucleus	35.26	39.95
CDY44519	Canola	cytosol, nucleus	38.25	34.49
CDX98239	Canola	nucleus	8.33	29.1
CDY46124	Canola	cytosol	32.69	24.68
CDY28290	Canola	cytosol, mitochondrion, nucleus	6.84	21.92
Os01t0973000-01	Rice	cytosol	1.07	1.78
CDX75342	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX78541	ProteinID:CDX78541	ProteinID:CDX78541.1
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051488
GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSBRNA2T00129945001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE2157	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA03g04530D

Coordinates

chrLK031815:-:1228967..1231321

Molecular Weight (calculated)

51484.5 Da

IEP (calculated)

9.142

GRAVY (calculated)

-0.497

Length

468 amino acids

Sequence
(BLAST)

001: MESPQKTKTG LNLPAGMNQT SLRLETFSSS FRGISTLSSP SKSTCSDRFI PCRSSSRLHA FDLQDKEPTT PVKEGGNEAY SRLLKSELFG SDFVSNSFPC
101: TSNMLRFKTD RSNSSPCSPF SPSILGNDNG LSSDSSPPPK PPRKVPKTPH KVLDAPSLQD DFYLNVVDWS SQNVLAVGLG TCVYLWSASN SKVTKLCDLG
201: PNDSVCSLQW TREGSYISVG TSHGQVQVWD GTQCKRVRTM GGHQTRTGVL AWNSRILSSG SRDRNILQHD IRVQSDYVSK LVGHKSEVCG LKWSHDDREL
301: ASGGNDNQLL VWNNHSQQPI HKLTEHTAAV KAITWSPHQS SLLASGGGTA DRCIRFWNTT NGHQLNSIDT GSQVCNLAWS KNVNEIVSTH GYSQNQIMLW
401: KYPSMAKVAT LTGHSMRVLY LATSPDGQTI VTGAGDETLR FWNVFPSVKM QTPVRDTGLW SLGRTQIR

Best Arabidopsis Sequence Match ( AT5G13840.1 )
(BLAST)

001: MASPQSTKTG LNLPAGMNQT SLRLETFSSS FRGISSLSSP SKSTCSDRFI PCRSSSRLHA FDLQDKEPTT PVKEGGNEAY SRLLKSELFG SDFASPLLSP
101: AGGQGSASSP MSPCTNMLRF KTDRSNSSPS SPFSPSILGN DNGHSSDSSP PPKPPRKVPK TPHKVLDAPS LQDDFYLNVV DWSSQNVLAV GLGTCVYLWT
201: ASNSKVTKLC DLGPNDSVCS VQWTREGSYI SIGTSHGQVQ VWDGTQCKRV RTMGGHQTRT GVLAWNSRIL SSGSRDRNIL QHDIRVQSDF VSKLVGHKSE
301: VCGLKWSHDD RELASGGNDN QLLVWNNHSQ QPILKLTEHT AAVKAITWSP HQSSLLASGG GTADRCIRFW NTTNGNQLNS IDTGSQVCNL AWSKNVNEIV
401: STHGYSQNQI MLWKYPSMSK VATLTGHSMR VLYLATSPDG QTIVTGAGDE TLRFWNVFPS VKMQTPVKDT GLWSLGRTQI R

Arabidopsis Description

FZR3Protein FIZZY-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.