Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- mitochondrion 3
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30431 | Canola | mitochondrion | 97.73 | 95.8 |
| CDY49701 | Canola | cytosol, extracellular, nucleus | 21.41 | 54.14 |
| AT3G29800.1 | Thale cress | extracellular, mitochondrion | 56.93 | 51.36 |
| CDY52774 | Canola | cytosol | 17.63 | 48.61 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078GAB9 | UniProt:A0A078GAB9 | InterPro:ATPase_AAA_core | EnsemblPlants:CDY23390 |
| ProteinID:CDY23390 | ProteinID:CDY23390.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00021994001 | InterPro:P-loop_NTPase | PFAM:PF00004 | PANTHER:PTHR23070 | PANTHER:PTHR23070:SF35 | SUPFAM:SSF52540 |
| UniParc:UPI0004EF148B | SEG:seg | : | : | : | : |
Description
BnaC04g49180DBnaC04g49180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAB9]
Coordinates
chrLK032143:+:251370..252726
Molecular Weight (calculated)
45777.8 Da
IEP (calculated)
5.832
GRAVY (calculated)
-0.227
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MFQAITRPIQ YLIISYLRYV SGSPSLTDTK HDHYVTTLVI EHSYKFVREN ILYSSTHAYV FNKLGIIHPV NYHVGELTLA DSYQGIELSW RIFYNKSIGR
101: ESFELRFDKR HKDLVYNSYL PYVESTAKEM TTIPEVHIYS HSFDTWETKP LEHHSTFETI AMKEELKRGL IHDLDMFVRR KDLYDRAGRP WTRSYLLYGP
201: PGTGKTSLVV AMAKYLNFDV YDLQLSRAVE SYFNPRKLLS GVMNNSILLV EDIDEGSTVL VLSNLLSSLT LGTPWGEARI VIFTTKNKDM IDPTLLSRMS
301: MKIYMGHCCF EGFKVLASTY LGLSHVDNDE PHRLYPDIKR LIDGQVITPA QVTVELMESE DVDVVLEGLV RTLESLTSDK IDDDEDEEKH LACLRDL
101: ESFELRFDKR HKDLVYNSYL PYVESTAKEM TTIPEVHIYS HSFDTWETKP LEHHSTFETI AMKEELKRGL IHDLDMFVRR KDLYDRAGRP WTRSYLLYGP
201: PGTGKTSLVV AMAKYLNFDV YDLQLSRAVE SYFNPRKLLS GVMNNSILLV EDIDEGSTVL VLSNLLSSLT LGTPWGEARI VIFTTKNKDM IDPTLLSRMS
301: MKIYMGHCCF EGFKVLASTY LGLSHVDNDE PHRLYPDIKR LIDGQVITPA QVTVELMESE DVDVVLEGLV RTLESLTSDK IDDDEDEEKH LACLRDL
001: MMLKLIKSMV QAITRPIQYL IISYLRYLVG PPSLTHHDNQ VTVIIEETSE NGRINVIHGA TQAYLFDKIN LDFVEEREFD DIYQGAKLKW RIFVDKNNIG
101: NIPKQCFELR FDEKHRDLVF DSYIPFVESK AKEIKSKKRI LEMHTYSHCC DTWETKILDH HSSFETIVMK EDLKRRLIDD IDLFISKEDF YKRVGRHWMR
201: YYLLHGLPGA GKTSLVAAIA KYLNFDVYNI TQGVKTDFDT RRLIRRVEDS SILLVEDIDT SLEGSKVALS QLLSSLTWPW SNGKARVVIF TTNNKERFDQ
301: TLLCRMEMKI YMGHCCFEDF KTLASNYLGI SHDNDAPHRL YPDIKRLIDG QAVTPGQVVE ELMKSQDVDV ALQSLVRYSS SKENDHIDDD LPQIPEETRK
401: NSNLDSKPRK SQTIIVEALN QVRCNETETG SNIDYSSNEK
101: NIPKQCFELR FDEKHRDLVF DSYIPFVESK AKEIKSKKRI LEMHTYSHCC DTWETKILDH HSSFETIVMK EDLKRRLIDD IDLFISKEDF YKRVGRHWMR
201: YYLLHGLPGA GKTSLVAAIA KYLNFDVYNI TQGVKTDFDT RRLIRRVEDS SILLVEDIDT SLEGSKVALS QLLSSLTWPW SNGKARVVIF TTNNKERFDQ
301: TLLCRMEMKI YMGHCCFEDF KTLASNYLGI SHDNDAPHRL YPDIKRLIDG QAVTPGQVVE ELMKSQDVDV ALQSLVRYSS SKENDHIDDD LPQIPEETRK
401: NSNLDSKPRK SQTIIVEALN QVRCNETETG SNIDYSSNEK
Arabidopsis Description
Mitochondrial protein-like contains similarity to AAA-type ATPase [Source:UniProtKB/TrEMBL;Acc:Q9LJ50]
SUBAcon: [extracellular,mitochondrion]
SUBAcon: [extracellular,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.