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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, extracellular

Predictor Summary:
  • plastid 2
  • mitochondrion 4
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, mitochondrion
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY23390 Canola mitochondrion 51.36 56.93
CDY30431 Canola mitochondrion 52.27 56.79
Bra037691.1-P Field mustard mitochondrion 50.45 55.92
CDY52774 Canola cytosol 14.09 43.06
Bra026527.1-P Field mustard cytosol, extracellular, nucleus 15.0 42.04
CDY49701 Canola cytosol, extracellular, nucleus 15.0 42.04
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1EntrezGene:822695ProteinID:AEE77615.1ArrayExpress:AT3G29800EnsemblPlantsGene:AT3G29800
RefSeq:AT3G29800TAIR:AT3G29800RefSeq:AT3G29800-TAIR-GEnsemblPlants:AT3G29800.1TAIR:AT3G29800.1InterPro:ATPase_AAA_core
Unigene:At.53586ProteinID:BAB02995.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005524GO:GO:0008150GO:GO:0016787RefSeq:NP_189629.1InterPro:P-loop_NTPasePFAM:PF00004
PANTHER:PTHR23070PANTHER:PTHR23070:SF35UniProt:Q9LJ50SUPFAM:SSF52540UniParc:UPI00000A4F8DSEG:seg
Description
Mitochondrial protein-like contains similarity to AAA-type ATPase [Source:UniProtKB/TrEMBL;Acc:Q9LJ50]
Coordinates
chr3:+:11720096..11722103
Molecular Weight (calculated)
51108.1 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.454
Length
440 amino acids
Sequence
(BLAST)
001: MMLKLIKSMV QAITRPIQYL IISYLRYLVG PPSLTHHDNQ VTVIIEETSE NGRINVIHGA TQAYLFDKIN LDFVEEREFD DIYQGAKLKW RIFVDKNNIG
101: NIPKQCFELR FDEKHRDLVF DSYIPFVESK AKEIKSKKRI LEMHTYSHCC DTWETKILDH HSSFETIVMK EDLKRRLIDD IDLFISKEDF YKRVGRHWMR
201: YYLLHGLPGA GKTSLVAAIA KYLNFDVYNI TQGVKTDFDT RRLIRRVEDS SILLVEDIDT SLEGSKVALS QLLSSLTWPW SNGKARVVIF TTNNKERFDQ
301: TLLCRMEMKI YMGHCCFEDF KTLASNYLGI SHDNDAPHRL YPDIKRLIDG QAVTPGQVVE ELMKSQDVDV ALQSLVRYSS SKENDHIDDD LPQIPEETRK
401: NSNLDSKPRK SQTIIVEALN QVRCNETETG SNIDYSSNEK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.