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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 1
  • nucleus 2
  • mitochondrion 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY49701 Canola cytosol, extracellular, nucleus 100.0 100.0
Bra037691.1-P Field mustard mitochondrion 54.14 21.41
AT3G29800.1 Thale cress extracellular, mitochondrion 42.04 15.0
Protein Annotations
EnsemblPlants:Bra026527.1EnsemblPlants:Bra026527.1-PEnsemblPlantsGene:Bra026527Gene3D:3.40.50.300InterPro:P-loop_NTPasePANTHER:PTHR23070
PANTHER:PTHR23070:SF35SEG:segSUPFAM:SSF52540UniParc:UPI00025464E3UniProt:M4ECL7MapMan:35.2
Description
AT3G29800 (E=1e-014) | AAA-type ATPase family
Coordinates
chrA02:+:19987211..19987985
Molecular Weight (calculated)
17412.5 Da
IEP (calculated)
5.158
GRAVY (calculated)
0.340
Length
157 amino acids
Sequence
(BLAST)
001: MSTILIGSSK GKISTIELGD LGREITCCMV LPGRGSTVLA LSDLLRSLVL GTPWGEARII VIFTTNNLDM LDPTLLSRIS VDIYMGHCCF EGFKVLASNY
101: WASLMTMMMS YTVSIQTSSV LLMDKLSHQY KSELMKSEDV NVVIEDLVRT LESFNSR
Best Arabidopsis Sequence Match ( AT3G29800.1 )
(BLAST)
001: MMLKLIKSMV QAITRPIQYL IISYLRYLVG PPSLTHHDNQ VTVIIEETSE NGRINVIHGA TQAYLFDKIN LDFVEEREFD DIYQGAKLKW RIFVDKNNIG
101: NIPKQCFELR FDEKHRDLVF DSYIPFVESK AKEIKSKKRI LEMHTYSHCC DTWETKILDH HSSFETIVMK EDLKRRLIDD IDLFISKEDF YKRVGRHWMR
201: YYLLHGLPGA GKTSLVAAIA KYLNFDVYNI TQGVKTDFDT RRLIRRVEDS SILLVEDIDT SLEGSKVALS QLLSSLTWPW SNGKARVVIF TTNNKERFDQ
301: TLLCRMEMKI YMGHCCFEDF KTLASNYLGI SHDNDAPHRL YPDIKRLIDG QAVTPGQVVE ELMKSQDVDV ALQSLVRYSS SKENDHIDDD LPQIPEETRK
401: NSNLDSKPRK SQTIIVEALN QVRCNETETG SNIDYSSNEK
Arabidopsis Description
Mitochondrial protein-like contains similarity to AAA-type ATPase [Source:UniProtKB/TrEMBL;Acc:Q9LJ50]
SUBAcon: [mitochondrion,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.