CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 5
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81858
CDX83876
CDX96739
CDY21722

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	CDX81858	AT1G18040.1	20706207
AT1G23190.1	CDX83876	AT1G18040.1	20706207
AT1G23190.1	CDX96739	AT1G18040.1	20706207
AT1G23190.1	CDY21722	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016357.1-P	Field mustard	plastid	88.96	24.87
CDY41458	Canola	plastid	88.96	24.87
CDY04740	Canola	plastid	87.12	24.36
AT1G23190.1	Thale cress	plastid	86.5	24.19
CDX91702	Canola	plastid	88.34	23.45
KRH41685	Soybean	nucleus	76.69	21.48
KRH60387	Soybean	endoplasmic reticulum	76.69	21.48
Solyc04g045340.2.1	Tomato	plastid	76.07	21.27
CDY21421	Canola	plastid	86.5	20.92
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	77.3	20.29
GSMUA_Achr8P30900_001	Banana	cytosol	69.94	19.55
Os03t0712700-01	Rice	plasma membrane	68.1	19.07
Zm00001d033746_P003	Maize	plastid	70.55	17.75
EER93574	Sorghum	plastid	70.55	17.72
Zm00001d013428_P002	Maize	plasma membrane	69.94	17.54
GSMUA_Achr2P06680_001	Banana	cytosol	61.35	17.33
HORVU4Hr1G007620.2	Barley	plasma membrane	68.71	17.2
TraesCS4A01G267000.1	Wheat	plastid	68.71	17.18
Zm00001d036666_P001	Maize	mitochondrion	62.58	17.03
TraesCS4B01G047300.1	Wheat	plastid	67.48	16.98
TraesCS4D01G047300.1	Wheat	plastid	67.48	16.92
Zm00001d036664_P001	Maize	cytosol, mitochondrion	61.35	16.16
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	13.5	13.66
KRH65519	Soybean	cytosol	17.79	11.42
CDY64652	Canola	plastid	42.94	11.13
CDY00500	Canola	plastid	42.94	11.02
CDY52135	Canola	extracellular, plasma membrane	4.91	5.16

Protein Annotations

EnsemblPlants:CDX91703	EnsemblPlantsGene:GSBRNA2T00153190001	Gene3D:3.30.310.50	GO:A0A078DWV3	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016868	GO:GO:0071704	InterPro:A-D-PHexomutase_C	InterPro:A-D-PHexomutase_C_sf
KEGG:00520+5.4.2.10	MetaCyc:PWY-6749	PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	PFAM:PF00408	ProteinID:CDX91703
ProteinID:CDX91703.1	SignalP:SignalP-noTM	SUPFAM:SSF55957	UniParc:UPI0004EE24B9	MapMan:35.1	:

Description

BnaC08g06220D

Coordinates

chrLK031869:-:305344..306777

Molecular Weight (calculated)

18341.2 Da

IEP (calculated)

7.386

GRAVY (calculated)

-0.136

Length

163 amino acids

Sequence
(BLAST)

001: MIVCISFVIR LRFCLRPCMA LHCWDQLWFP KNVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVANVS SADEFEYKDP VDGSISKHQG IRYLFEDGSR
101: LVFRLSGTGS EGATIRLYIE QYEKDASKIG RESQEALSPL VDIALKLSKM EEFTGRSAPT VIT

Best Arabidopsis Sequence Match ( AT1G23190.1 )
(BLAST)

001: MVFKVSTVST SPIDGQKPGT SGLRKKVKVF KQPNYLENFV QATFNALTAE KVKGATLVVS GDGRYYSKDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGAFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAQDLP NVDISAVGVT SFEGPEGKFD VEVFDPADDY
201: VKLMKSIFDF EAIRKLLSSP KFTFCYDALH GVAGAYAHRI FVEELGAQES ALLNCTPKED FGGGHPDPNL TYAKELVARM GLGKSDTGGE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAIGA IPYFSSGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWMS ILAHKNKGNI DGNAKLVSVE DIVRQHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVASVA SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESQEALSPL VDLALKLSKM EEFTGRSAPT VIT

Arabidopsis Description

PGM3Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.