CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39114
KRH41782
KRH48600
KRH60482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	KRH39114	AT1G18040.1	20706207
AT1G23190.1	KRH41782	AT1G18040.1	20706207
AT1G23190.1	KRH48600	AT1G18040.1	20706207
AT1G23190.1	KRH60482	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	40.16	63.35
KRH41685	Soybean	nucleus	83.46	36.43
KRH60387	Soybean	endoplasmic reticulum	82.68	36.08
GSMUA_Achr8P30900_001	Banana	cytosol	76.77	33.45
Bra016357.1-P	Field mustard	plastid	75.59	32.93
Bra024568.1-P	Field mustard	plastid	75.59	32.93
CDY41458	Canola	plastid	75.59	32.93
GSMUA_Achr2P06680_001	Banana	cytosol	74.8	32.93
Os03t0712700-01	Rice	plasma membrane	74.8	32.65
CDY04740	Canola	plastid	74.8	32.59
AT1G23190.1	Thale cress	plastid	74.41	32.42
Solyc04g045340.2.1	Tomato	plastid	72.83	31.73
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	76.77	31.4
CDX91702	Canola	plastid	75.2	31.11
Zm00001d036664_P001	Maize	cytosol, mitochondrion	74.02	30.37
TraesCS4B01G047300.1	Wheat	plastid	75.98	29.78
TraesCS4D01G047300.1	Wheat	plastid	75.98	29.69
TraesCS4A01G267000.1	Wheat	plastid	75.59	29.45
HORVU4Hr1G007620.2	Barley	plasma membrane	74.8	29.19
Zm00001d033746_P003	Maize	plastid	74.41	29.17
Zm00001d013428_P002	Maize	plasma membrane	74.41	29.08
EER93574	Sorghum	plastid	74.02	28.97
Zm00001d036666_P001	Maize	mitochondrion	68.11	28.88
AT1G70730.3	Thale cress	plastid	74.41	28.55
CDY21421	Canola	plastid	75.2	28.34
KRH35404	Soybean	nucleus	54.72	22.13
KRG91417	Soybean	nucleus	53.94	21.82
CDX91703	Canola	endoplasmic reticulum	11.42	17.79

Protein Annotations

KEGG:00520+5.4.2.10	Gene3D:3.30.310.50	Gene3D:3.40.120.10	MapMan:50.5.4	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-III
UniProt:A0A0R0KQV8	EMBL:ACUP02001363	InterPro:Alpha-D-phosphohexomutase_SF	EnsemblPlantsGene:GLYMA_03G042000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004614	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0005978	GO:GO:0006006	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009590	GO:GO:0009605
GO:GO:0009628	GO:GO:0009987	GO:GO:0010319	GO:GO:0016868	GO:GO:0019252	GO:GO:0019388
GO:GO:0071704	EnsemblPlants:KRH65519	ProteinID:KRH65519	ProteinID:KRH65519.1	PFAM:PF02880	PRINTS:PR00509
PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	MetaCyc:PWY-6749	SUPFAM:SSF53738	SignalP:SignalP-noTM	UniParc:UPI0006ED798D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:5338371..5339944

Molecular Weight (calculated)

28375.8 Da

IEP (calculated)

4.696

GRAVY (calculated)

-0.112

Length

254 amino acids

Sequence
(BLAST)

001: MSVVICLDLW MTCWIQEDFG GGHPDPNLTY AKELVARMGL GKSEPQDEPP EFGAASDGDA DRNMVLGKRF FVTALDSVAI IAANAVEAIP YFSAGLKGVA
101: RSMPTSAALD VVAKHLNLKF FEVPTGWKFF GNLMDARLCS VCGEESFGTG SGRIREKDGI WEVLAWLSIL AYKNKDKLED KLVTVEDIVR QHWATYGRHY
201: YNQYDYENVD AGAAKELMAY LVKLQSSLSE VDQYVNFSTL TIEAIWFTQL RKES

Best Arabidopsis Sequence Match ( AT1G23190.1 )
(BLAST)

001: MVFKVSTVST SPIDGQKPGT SGLRKKVKVF KQPNYLENFV QATFNALTAE KVKGATLVVS GDGRYYSKDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGAFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAQDLP NVDISAVGVT SFEGPEGKFD VEVFDPADDY
201: VKLMKSIFDF EAIRKLLSSP KFTFCYDALH GVAGAYAHRI FVEELGAQES ALLNCTPKED FGGGHPDPNL TYAKELVARM GLGKSDTGGE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAIGA IPYFSSGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWMS ILAHKNKGNI DGNAKLVSVE DIVRQHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVASVA SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESQEALSPL VDLALKLSKM EEFTGRSAPT VIT

Arabidopsis Description

PGM3Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.