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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 9
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG91417 Soybean nucleus 87.74 87.74
VIT_16s0022g02320.t01 Wine grape plastid 80.41 82.25
AT5G51820.1 Thale cress plastid 80.1 80.74
Solyc03g006870.2.1 Tomato plastid 80.25 79.75
Bra028278.1-P Field mustard plastid 79.14 79.14
CDY64652 Canola plastid 79.14 79.01
CDY00500 Canola plastid 78.98 78.11
GSMUA_Achr8P19110_001 Banana plastid 77.71 77.83
Os10t0189100-01 Rice plastid 75.16 77.5
EES03286 Sorghum mitochondrion, plastid 73.73 76.15
Zm00001d044211_P001 Maize plastid 70.22 73.01
KRH60387 Soybean endoplasmic reticulum 53.82 58.08
KRH41685 Soybean nucleus 53.66 57.9
KRH65519 Soybean cytosol 22.13 54.72
KRH65565 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole 12.26 47.83
Protein Annotations
KEGG:00520+5.4.2.10EntrezGene:100802730MapMan:3.2.2.2Gene3D:3.30.310.50Gene3D:3.40.120.10InterPro:A-D-PHexomutase_C
InterPro:A-D-PHexomutase_CSInterPro:A-D-PHexomutase_C_sfInterPro:A-D-PHexomutase_a/b/a-IInterPro:A-D-PHexomutase_a/b/a-I/II/IIIInterPro:A-D-PHexomutase_a/b/a-IIInterPro:A-D-PHexomutase_a/b/a-III
EMBL:ACUP02006672InterPro:Alpha-D-phosphohexomutase_SFEnsemblPlantsGene:GLYMA_10G241000GO:GO:0000287GO:GO:0003674GO:GO:0003824
GO:GO:0004614GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005975GO:GO:0005978GO:GO:0006006GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009536GO:GO:0009570GO:GO:0009590
GO:GO:0009605GO:GO:0009628GO:GO:0009987GO:GO:0010319GO:GO:0016868GO:GO:0019252
GO:GO:0019388GO:GO:0071704UniProt:I1LDX0EnsemblPlants:KRH35404ProteinID:KRH35404ProteinID:KRH35404.1
PFAM:PF00408PFAM:PF02878PFAM:PF02879PFAM:PF02880PRINTS:PR00509ScanProsite:PS00710
PANTHER:PTHR22573PANTHER:PTHR22573:SF47MetaCyc:PWY-6749SUPFAM:SSF53738SUPFAM:SSF55957UniParc:UPI000233C7EA
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr10:+:46938908..46948308
Molecular Weight (calculated)
68477.5 Da
IEP (calculated)
6.343
GRAVY (calculated)
-0.159
Length
628 amino acids
Sequence
(BLAST)
001: MAFSCKLDSF ILSAYKPQNS ILPLSIQPSS FLPSPSSLKP QKLPFRIRYG STIRATSSSS TPSATIAEPE GIKIKSIPTK PIDGQKTGTS GLRKKVKVFM
101: QDNYLANWIQ ALFNSLPPED YKNGLLVLGG DGRYFNQEAA QIIIKIAAGN GVGKILVGKE GILSTPAVSA VIRKRKANGG FIMSASHNPG GPEYDWGIKF
201: NYSSGQPAPE SITDKIYGNT LSISEIKIAD IPDVDLSKVG VTNFGSFSVE VIDPVSDYLE LLETVFDFQL IRGLLSRPDF RFIFDAMHAV TGAYAKPIFV
301: DKLGASLDSI SNGIPLEDFG HGHPDPNLTY AKDLVNILYA ENGPDFGAAS DGDGDRNMIL GRSFFVTPSD SVAVIAANAR EAIPYFKNGV KGLARSMPTS
401: GALDRVAKKL NLPFFEVPTG WKFFGNLMDA GNLSVCGEES FGTGSDHIRE KDGIWAVLAW LSIIAHRNKD KNPGEKLISV SDVVMEHWAT YGRNFFSRYD
501: YEECESEGAN KMIEYLRDIL SKSKPGDQYG SYVLQFADDF TYTDPVDGSV VSKQGVRFVF TDGSRIIYRL SGTGSAGATV RVYIEQFEPD VSKHDVDAQI
601: ALKPLIDLAI SVSKLKDFTG REKPTVIT
Best Arabidopsis Sequence Match ( AT5G51820.1 )
(BLAST)
001: MTSTYTRFDT VFLFSRFAGA KYSPLLPSPS FTLSTSGIHI RTKPNSRFHS IIASSSSSSV VAGTDSIEIK SLPTKPIEGQ KTGTSGLRKK VKVFMEDNYL
101: ANWIQALFNS LPLEDYKNAT LVLGGDGRYF NKEASQIIIK IAAGNGVGQI LVGKEGILST PAVSAVIRKR KANGGFIMSA SHNPGGPEYD WGIKFNYSSG
201: QPAPETITDK IYGNTLSISE IKVAEIPDID LSQVGVTKYG NFSVEVIDPV SDYLELMEDV FDFDLIRGLL SRSDFGFMFD AMHAVTGAYA KPIFVDNLGA
301: KPDSISNGVP LEDFGHGHPD PNLTYAKDLV DVMYRDNGPD FGAASDGDGD RNMVLGNKFF VTPSDSVAII AANAQEAIPY FRAGPKGLAR SMPTSGALDR
401: VAEKLKLPFF EVPTGWKFFG NLMDAGKLSI CGEESFGTGS DHIREKDGIW AVLAWLSILA HRNKDTKPGD KLVSVADVVK EYWATYGRNF FSRYDYEECE
501: SEGANKMIEY LREILSKSKA GDVYGNYVLQ FADDFSYTDP VDGSVASKQG VRFVFTDGSR IIFRLSGTGS AGATVRIYIE QFEPDVSKHD VDAQIALKPL
601: IDLALSVSKL KDFTGREKPT VIT
Arabidopsis Description
PGMPPhosphoglucomutase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.