Factsheet for Solyc03g006870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g02320.t01	Wine grape	plastid	81.33	83.71
KRH35404	Soybean	nucleus	79.75	80.25
AT5G51820.1	Thale cress	plastid	78.96	80.1
KRG91417	Soybean	nucleus	79.43	79.94
Bra028278.1-P	Field mustard	plastid	79.11	79.62
CDY64652	Canola	plastid	78.64	79.01
Os10t0189100-01	Rice	plastid	76.11	78.98
CDY00500	Canola	plastid	78.96	78.58
GSMUA_Achr8P19110_001	Banana	plastid	76.11	76.71
EES03286	Sorghum	mitochondrion, plastid	73.26	76.15
Zm00001d044211_P001	Maize	plastid	69.78	73.01
Solyc04g045340.2.1	Tomato	plastid	52.53	56.95

Protein Annotations

KEGG:00520+5.4.2.10	MapMan:3.2.2.2	Gene3D:3.30.310.50	Gene3D:3.40.120.10	InterPro:A-D-PHexomutase_C	InterPro:A-D-PHexomutase_CS
InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II	InterPro:A-D-PHexomutase_a/b/a-III	InterPro:Alpha-D-phosphohexomutase_SF
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004614	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975
GO:GO:0005978	GO:GO:0006006	GO:GO:0006091	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009590	GO:GO:0009605	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010319
GO:GO:0016868	GO:GO:0019252	GO:GO:0019388	GO:GO:0048046	GO:GO:0071704	UniProt:K4BEB0
PFAM:PF00408	PFAM:PF02878	PFAM:PF02879	PFAM:PF02880	PRINTS:PR00509	ScanProsite:PS00710
PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	SUPFAM:SSF53738	SUPFAM:SSF55957	EnsemblPlantsGene:Solyc03g006870.2	EnsemblPlants:Solyc03g006870.2.1
UniParc:UPI0002767D6A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:1382913..1390635

Molecular Weight (calculated)

68738.4 Da

IEP (calculated)

5.818

GRAVY (calculated)

-0.126

Length

632 amino acids

Sequence
(BLAST)

001: MAMESALAST RVSIPSLCSG ITSSHHHHRS LSFLSFPKLC SFKYCFRTIS TVPFVVSASS VSPSSPSTSV AQSQDLKIKS VPTKPIEGQK TGTSGLRKKV
101: KVFMQDNYLA NWIQALFNSL PLEDYKNGLL VLGGDGRYFN REAAQIIIKI AAGNGVGKIL VGKDGILSTP AVSAVIRKRE ANGGFIMSAS HNPGGPEYDW
201: GIKFNYSSGQ PAPESITDKI YGNTLSISEI KIADVPDVDL SQLGVTKYGN FSVEVVDPVA DYLELMENVF DFSLIRSLVS RPDFRFVFDA MHAVTGAYAK
301: PIFVDKLGAS LDSIANGVPL EDFGHGHPDP NLTYAEDLVN ILYGENGPDF GAASDGDGDR NMILGRSFFV TPSDSVAIIA ANAQDAIPYF QSGPKGLARS
401: MPTSGSLDRV AQKLNLPFFE VPTGWKFFGN LMDAGKLSIC GEESFGTGSD HIREKDGIWA VLAWLSILAY RNKDKRSGEI LVSVADVVKE HWATYGRNFF
501: SRYDYEECES EGANNMIEHL RDLISKSKAG DKYGSYSLDF ADDFAYTDPV DGSIASKQGV RFVFSDGSRI IFRLSGTGSA GATVRIYIEQ FEPDVSKHDM
601: DAQIALKPLI DLALSISKLK DFTGREKPTV IT

Best Arabidopsis Sequence Match ( AT5G51820.1 )
(BLAST)

001: MTSTYTRFDT VFLFSRFAGA KYSPLLPSPS FTLSTSGIHI RTKPNSRFHS IIASSSSSSV VAGTDSIEIK SLPTKPIEGQ KTGTSGLRKK VKVFMEDNYL
101: ANWIQALFNS LPLEDYKNAT LVLGGDGRYF NKEASQIIIK IAAGNGVGQI LVGKEGILST PAVSAVIRKR KANGGFIMSA SHNPGGPEYD WGIKFNYSSG
201: QPAPETITDK IYGNTLSISE IKVAEIPDID LSQVGVTKYG NFSVEVIDPV SDYLELMEDV FDFDLIRGLL SRSDFGFMFD AMHAVTGAYA KPIFVDNLGA
301: KPDSISNGVP LEDFGHGHPD PNLTYAKDLV DVMYRDNGPD FGAASDGDGD RNMVLGNKFF VTPSDSVAII AANAQEAIPY FRAGPKGLAR SMPTSGALDR
401: VAEKLKLPFF EVPTGWKFFG NLMDAGKLSI CGEESFGTGS DHIREKDGIW AVLAWLSILA HRNKDTKPGD KLVSVADVVK EYWATYGRNF FSRYDYEECE
501: SEGANKMIEY LREILSKSKA GDVYGNYVLQ FADDFSYTDP VDGSVASKQG VRFVFTDGSR IIFRLSGTGS AGATVRIYIE QFEPDVSKHD VDAQIALKPL
601: IDLALSVSKL KDFTGREKPT VIT

Arabidopsis Description

PGMPPhosphoglucomutase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.