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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 4
  • plastid 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26583031 doi
F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc08g081280.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G23190.1 Solyc08g081280.2.1 AT1G18040.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH60387 Soybean endoplasmic reticulum 85.42 85.57
KRH41685 Soybean nucleus 84.73 84.88
AT1G23190.1 Thale cress plastid 83.53 83.53
Bra016357.1-P Field mustard plastid 83.53 83.53
Os03t0712700-01 Rice plasma membrane 83.19 83.33
CDY41458 Canola plastid 83.19 83.19
GSMUA_Achr8P30900_001 Banana cytosol 82.5 82.5
GSMUA_Achr2P06680_001 Banana cytosol 79.76 80.59
CDX91702 Canola plastid 83.7 79.48
VIT_01s0011g05370.t01 Wine grape cytosol, mitochondrion 83.53 78.42
Bra024568.1-P Field mustard plastid 76.16 76.16
CDX91703 Canola endoplasmic reticulum 21.27 76.07
CDY04740 Canola plastid 75.81 75.81
EER93574 Sorghum plastid 83.53 75.04
Zm00001d033746_P003 Maize plastid 83.36 75.0
Zm00001d013428_P002 Maize plasma membrane 82.85 74.31
AT1G70730.3 Thale cress plastid 84.22 74.17
KRH65519 Soybean cytosol 31.73 72.83
HORVU4Hr1G007620.2 Barley plasma membrane 80.79 72.35
TraesCS4A01G267000.1 Wheat plastid 80.79 72.24
CDY21421 Canola plastid 83.36 72.11
TraesCS4B01G047300.1 Wheat plastid 79.93 71.91
TraesCS4D01G047300.1 Wheat plastid 79.07 70.92
Zm00001d036664_P001 Maize cytosol, mitochondrion 73.07 68.82
Zm00001d036666_P001 Maize mitochondrion 66.38 64.61
KRH65565 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole 15.78 57.14
Solyc03g006870.2.1 Tomato plastid 56.95 52.53
Protein Annotations
KEGG:00520+5.4.2.10MapMan:3.1.2.5Gene3D:3.30.310.50Gene3D:3.40.120.10InterPro:A-D-PHexomutase_CInterPro:A-D-PHexomutase_CS
InterPro:A-D-PHexomutase_C_sfInterPro:A-D-PHexomutase_a/b/a-IInterPro:A-D-PHexomutase_a/b/a-I/II/IIIInterPro:A-D-PHexomutase_a/b/a-IIInterPro:A-D-PHexomutase_a/b/a-IIIInterPro:Alpha-D-phosphohexomutase_SF
GO:GO:0000287GO:GO:0003674GO:GO:0003824GO:GO:0004614GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005975GO:GO:0005978
GO:GO:0006006GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058
GO:GO:0009536GO:GO:0009570GO:GO:0009590GO:GO:0009605GO:GO:0009628GO:GO:0009987
GO:GO:0010319GO:GO:0016868GO:GO:0019252GO:GO:0019388GO:GO:0046872GO:GO:0071704
UniProt:K4BRG8PFAM:PF00408PFAM:PF02878PFAM:PF02879PFAM:PF02880PRINTS:PR00509
ScanProsite:PS00710PANTHER:PTHR22573PANTHER:PTHR22573:SF47SUPFAM:SSF53738SUPFAM:SSF55957EnsemblPlantsGene:Solyc04g045340.2
EnsemblPlants:Solyc04g045340.2.1UniParc:UPI0002766214SEG:seg:::
Description
No Description!
Coordinates
chr4:+:32494690..32509832
Molecular Weight (calculated)
63455.3 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.215
Length
583 amino acids
Sequence
(BLAST)
001: MANFKVSRVE TTPFEGQKPG TSGLRKKVKV FIQPHYLQNF VQATFNALGA DRVEGATLVV SGDGRYYSKD AIQIITKMAA ANGVRRVWIG QNGLLSTPAV
101: SAVVRERVGA DGSKATGAFI LTASHNPGGP HEDFGIKYNM ENGGPAPEGI TNKIYENTTI IKEYLIAEGL PDVIISTTGV SSFEGPKGKF DVDVFDSTSD
201: YLKLLKSIFD FPAIQKLLSS PKFSFCYDAL HGVAGVHAKR IFVEELGANE TSLVNCVPKE DFGGGHPDPN LTYAKELVAR MGLSKTHSEP NPPEFGAAAD
301: GDGDRNMVLG KRFFVTPSDS VAIIAANAVQ AIPYFSGGLK GVARSMPTSA ALDIVAKHLN LKFFEVPTGW KFFGNLMDAG MCSICGEESF GTGSDHIREK
401: DGIWAVLAWL SILAYKNKDN LGEGNLVSVE DIVRQHWATY GRHYYTRYDY ENVNADGAKD LMAHLVKLQS SIDEVNKLIK GIRSDVSNVV HADEFEYKDP
501: VDGSVSKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDSSKIG RDSQEALAPL VEVALKLSKM QEYTGRSAPT VIT
Best Arabidopsis Sequence Match ( AT1G70730.3 )
(BLAST)
001: MFLLVTSCFL PDSGSSVKVS LFIFGTKRDP TKKKNEKRRA TRVTFSFSLF ISFPQTHCVK RLLFYHLQAY SIFFRFEMVS FKVSLVSTSP IDGQKPGTSG
101: LRKKVKVFKQ PNYLENFVQA TFNALTTEKV KGATLVVSGD GRYYSEQAIQ IIVKMAAANG VRRVWVGQNS LLSTPAVSAI IRERVGADGS KATGAFILTA
201: SHNPGGPTED FGIKYNMENG GPAPESITDK IYENTKTIKE YPIAEDLPRV DISTIGITSF EGPEGKFDVE VFDSADDYVK LMKSIFDFES IKKLLSYPKF
301: TFCYDALHGV AGAYAHRIFV EELGAPESSL LNCVPKEDFG GGHPDPNLTY AKELVARMGL SKTDDAGGEP PEFGAAADGD ADRNMILGKR FFVTPSDSVA
401: IIAANAVGAI PYFSSGLKGV ARSMPTSAAL DVVAKNLGLK FFEVPTGWKF FGNLMDAGMC SVCGEESFGT GSDHIREKDG IWAVLAWLSI LAHKNKETLD
501: GNAKLVTVED IVRQHWATYG RHYYTRYDYE NVDATAAKEL MGLLVKLQSS LPEVNKIIKG IHPEVANVAS ADEFEYKDPV DGSVSKHQGI RYLFEDGSRL
601: VFRLSGTGSE GATIRLYIEQ YEKDASKIGR DSQDALGPLV DVALKLSKMQ EFTGRSSPTV IT
Arabidopsis Description
PGM2Phosphoglucomutase/phosphomannomutase family protein [Source:UniProtKB/TrEMBL;Acc:F4I6W4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.