Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 plastid: 26371478 unclear: 26455813 extracellular: 26583031 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26583031
doi
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc08g081280.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G23190.1 | Solyc08g081280.2.1 | AT1G18040.1 | 20706207 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH60387 | Soybean | endoplasmic reticulum | 85.42 | 85.57 |
KRH41685 | Soybean | nucleus | 84.73 | 84.88 |
AT1G23190.1 | Thale cress | plastid | 83.53 | 83.53 |
Bra016357.1-P | Field mustard | plastid | 83.53 | 83.53 |
Os03t0712700-01 | Rice | plasma membrane | 83.19 | 83.33 |
CDY41458 | Canola | plastid | 83.19 | 83.19 |
GSMUA_Achr8P30900_001 | Banana | cytosol | 82.5 | 82.5 |
GSMUA_Achr2P06680_001 | Banana | cytosol | 79.76 | 80.59 |
CDX91702 | Canola | plastid | 83.7 | 79.48 |
VIT_01s0011g05370.t01 | Wine grape | cytosol, mitochondrion | 83.53 | 78.42 |
Bra024568.1-P | Field mustard | plastid | 76.16 | 76.16 |
CDX91703 | Canola | endoplasmic reticulum | 21.27 | 76.07 |
CDY04740 | Canola | plastid | 75.81 | 75.81 |
EER93574 | Sorghum | plastid | 83.53 | 75.04 |
Zm00001d033746_P003 | Maize | plastid | 83.36 | 75.0 |
Zm00001d013428_P002 | Maize | plasma membrane | 82.85 | 74.31 |
AT1G70730.3 | Thale cress | plastid | 84.22 | 74.17 |
KRH65519 | Soybean | cytosol | 31.73 | 72.83 |
HORVU4Hr1G007620.2 | Barley | plasma membrane | 80.79 | 72.35 |
TraesCS4A01G267000.1 | Wheat | plastid | 80.79 | 72.24 |
CDY21421 | Canola | plastid | 83.36 | 72.11 |
TraesCS4B01G047300.1 | Wheat | plastid | 79.93 | 71.91 |
TraesCS4D01G047300.1 | Wheat | plastid | 79.07 | 70.92 |
Zm00001d036664_P001 | Maize | cytosol, mitochondrion | 73.07 | 68.82 |
Zm00001d036666_P001 | Maize | mitochondrion | 66.38 | 64.61 |
KRH65565 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 15.78 | 57.14 |
Solyc03g006870.2.1 | Tomato | plastid | 56.95 | 52.53 |
Protein Annotations
KEGG:00520+5.4.2.10 | MapMan:3.1.2.5 | Gene3D:3.30.310.50 | Gene3D:3.40.120.10 | InterPro:A-D-PHexomutase_C | InterPro:A-D-PHexomutase_CS |
InterPro:A-D-PHexomutase_C_sf | InterPro:A-D-PHexomutase_a/b/a-I | InterPro:A-D-PHexomutase_a/b/a-I/II/III | InterPro:A-D-PHexomutase_a/b/a-II | InterPro:A-D-PHexomutase_a/b/a-III | InterPro:Alpha-D-phosphohexomutase_SF |
GO:GO:0000287 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004614 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005975 | GO:GO:0005978 |
GO:GO:0006006 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 |
GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009590 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 |
GO:GO:0010319 | GO:GO:0016868 | GO:GO:0019252 | GO:GO:0019388 | GO:GO:0046872 | GO:GO:0071704 |
UniProt:K4BRG8 | PFAM:PF00408 | PFAM:PF02878 | PFAM:PF02879 | PFAM:PF02880 | PRINTS:PR00509 |
ScanProsite:PS00710 | PANTHER:PTHR22573 | PANTHER:PTHR22573:SF47 | SUPFAM:SSF53738 | SUPFAM:SSF55957 | EnsemblPlantsGene:Solyc04g045340.2 |
EnsemblPlants:Solyc04g045340.2.1 | UniParc:UPI0002766214 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4:+:32494690..32509832
Molecular Weight (calculated)
63455.3 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.215
Length
583 amino acids
Sequence
(BLAST)
(BLAST)
001: MANFKVSRVE TTPFEGQKPG TSGLRKKVKV FIQPHYLQNF VQATFNALGA DRVEGATLVV SGDGRYYSKD AIQIITKMAA ANGVRRVWIG QNGLLSTPAV
101: SAVVRERVGA DGSKATGAFI LTASHNPGGP HEDFGIKYNM ENGGPAPEGI TNKIYENTTI IKEYLIAEGL PDVIISTTGV SSFEGPKGKF DVDVFDSTSD
201: YLKLLKSIFD FPAIQKLLSS PKFSFCYDAL HGVAGVHAKR IFVEELGANE TSLVNCVPKE DFGGGHPDPN LTYAKELVAR MGLSKTHSEP NPPEFGAAAD
301: GDGDRNMVLG KRFFVTPSDS VAIIAANAVQ AIPYFSGGLK GVARSMPTSA ALDIVAKHLN LKFFEVPTGW KFFGNLMDAG MCSICGEESF GTGSDHIREK
401: DGIWAVLAWL SILAYKNKDN LGEGNLVSVE DIVRQHWATY GRHYYTRYDY ENVNADGAKD LMAHLVKLQS SIDEVNKLIK GIRSDVSNVV HADEFEYKDP
501: VDGSVSKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDSSKIG RDSQEALAPL VEVALKLSKM QEYTGRSAPT VIT
101: SAVVRERVGA DGSKATGAFI LTASHNPGGP HEDFGIKYNM ENGGPAPEGI TNKIYENTTI IKEYLIAEGL PDVIISTTGV SSFEGPKGKF DVDVFDSTSD
201: YLKLLKSIFD FPAIQKLLSS PKFSFCYDAL HGVAGVHAKR IFVEELGANE TSLVNCVPKE DFGGGHPDPN LTYAKELVAR MGLSKTHSEP NPPEFGAAAD
301: GDGDRNMVLG KRFFVTPSDS VAIIAANAVQ AIPYFSGGLK GVARSMPTSA ALDIVAKHLN LKFFEVPTGW KFFGNLMDAG MCSICGEESF GTGSDHIREK
401: DGIWAVLAWL SILAYKNKDN LGEGNLVSVE DIVRQHWATY GRHYYTRYDY ENVNADGAKD LMAHLVKLQS SIDEVNKLIK GIRSDVSNVV HADEFEYKDP
501: VDGSVSKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDSSKIG RDSQEALAPL VEVALKLSKM QEYTGRSAPT VIT
001: MFLLVTSCFL PDSGSSVKVS LFIFGTKRDP TKKKNEKRRA TRVTFSFSLF ISFPQTHCVK RLLFYHLQAY SIFFRFEMVS FKVSLVSTSP IDGQKPGTSG
101: LRKKVKVFKQ PNYLENFVQA TFNALTTEKV KGATLVVSGD GRYYSEQAIQ IIVKMAAANG VRRVWVGQNS LLSTPAVSAI IRERVGADGS KATGAFILTA
201: SHNPGGPTED FGIKYNMENG GPAPESITDK IYENTKTIKE YPIAEDLPRV DISTIGITSF EGPEGKFDVE VFDSADDYVK LMKSIFDFES IKKLLSYPKF
301: TFCYDALHGV AGAYAHRIFV EELGAPESSL LNCVPKEDFG GGHPDPNLTY AKELVARMGL SKTDDAGGEP PEFGAAADGD ADRNMILGKR FFVTPSDSVA
401: IIAANAVGAI PYFSSGLKGV ARSMPTSAAL DVVAKNLGLK FFEVPTGWKF FGNLMDAGMC SVCGEESFGT GSDHIREKDG IWAVLAWLSI LAHKNKETLD
501: GNAKLVTVED IVRQHWATYG RHYYTRYDYE NVDATAAKEL MGLLVKLQSS LPEVNKIIKG IHPEVANVAS ADEFEYKDPV DGSVSKHQGI RYLFEDGSRL
601: VFRLSGTGSE GATIRLYIEQ YEKDASKIGR DSQDALGPLV DVALKLSKMQ EFTGRSSPTV IT
101: LRKKVKVFKQ PNYLENFVQA TFNALTTEKV KGATLVVSGD GRYYSEQAIQ IIVKMAAANG VRRVWVGQNS LLSTPAVSAI IRERVGADGS KATGAFILTA
201: SHNPGGPTED FGIKYNMENG GPAPESITDK IYENTKTIKE YPIAEDLPRV DISTIGITSF EGPEGKFDVE VFDSADDYVK LMKSIFDFES IKKLLSYPKF
301: TFCYDALHGV AGAYAHRIFV EELGAPESSL LNCVPKEDFG GGHPDPNLTY AKELVARMGL SKTDDAGGEP PEFGAAADGD ADRNMILGKR FFVTPSDSVA
401: IIAANAVGAI PYFSSGLKGV ARSMPTSAAL DVVAKNLGLK FFEVPTGWKF FGNLMDAGMC SVCGEESFGT GSDHIREKDG IWAVLAWLSI LAHKNKETLD
501: GNAKLVTVED IVRQHWATYG RHYYTRYDYE NVDATAAKEL MGLLVKLQSS LPEVNKIIKG IHPEVANVAS ADEFEYKDPV DGSVSKHQGI RYLFEDGSRL
601: VFRLSGTGSE GATIRLYIEQ YEKDASKIGR DSQDALGPLV DVALKLSKMQ EFTGRSSPTV IT
Arabidopsis Description
PGM2Phosphoglucomutase/phosphomannomutase family protein [Source:UniProtKB/TrEMBL;Acc:F4I6W4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.