Factsheet for HORVU4Hr1G007620.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G062980.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	HORVU1Hr1G062980.2	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G047300.1	Wheat	plastid	92.78	93.21
TraesCS4A01G267000.1	Wheat	plastid	93.09	92.94
TraesCS4D01G047300.1	Wheat	plastid	92.01	92.15
Os03t0712700-01	Rice	plasma membrane	81.11	90.72
Zm00001d033746_P003	Maize	plastid	83.56	83.95
GSMUA_Achr8P30900_001	Banana	cytosol	74.65	83.36
Zm00001d013428_P002	Maize	plasma membrane	82.95	83.08
Bra016357.1-P	Field mustard	plastid	73.73	82.33
EER93574	Sorghum	plastid	81.87	82.13
AT1G23190.1	Thale cress	plastid	73.43	81.99
CDY41458	Canola	plastid	73.43	81.99
GSMUA_Achr2P06680_001	Banana	cytosol	72.04	81.28
KRH60387	Soybean	endoplasmic reticulum	72.66	81.27
KRH41685	Soybean	nucleus	72.5	81.1
Solyc04g045340.2.1	Tomato	plastid	72.35	80.79
CDX91702	Canola	plastid	73.27	77.69
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	72.81	76.33
Bra024568.1-P	Field mustard	plastid	67.28	75.13
KRH65519	Soybean	cytosol	29.19	74.8
AT1G70730.3	Thale cress	plastid	75.58	74.32
CDY04740	Canola	plastid	66.51	74.27
Zm00001d036664_P001	Maize	cytosol, mitochondrion	69.74	73.34
CDY21421	Canola	plastid	73.58	71.07
Zm00001d036666_P001	Maize	mitochondrion	64.36	69.95
CDX91703	Canola	endoplasmic reticulum	17.2	68.71
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	15.36	62.11

Protein Annotations

KEGG:00520+5.4.2.10	MapMan:3.1.2.5	Gene3D:3.30.310.50	Gene3D:3.40.120.10	InterPro:A-D-PHexomutase_C	InterPro:A-D-PHexomutase_CS
InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II	InterPro:A-D-PHexomutase_a/b/a-III	InterPro:Alpha-D-phosphohexomutase_SF
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016868	GO:GO:0071704	EnsemblPlantsGene:HORVU4Hr1G007620	EnsemblPlants:HORVU4Hr1G007620.2	UniProt:M0XQ24
PFAM:PF00408	PFAM:PF02878	PFAM:PF02879	PFAM:PF02880	PRINTS:PR00509	ScanProsite:PS00710
PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	SUPFAM:SSF53738	SUPFAM:SSF55957	UniParc:UPI000296F36E	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:20176460..20183310

Molecular Weight (calculated)

70307.4 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.216

Length

651 amino acids

Sequence
(BLAST)

001: MIPLCAPSTP AIIAPRPRRL RHRTTTPSPP HSRSPHHRGH LHLASSSSSA HRPRPLARAQ RPGAVVTAAD MVFSVTKRDT TPYEGQKPGT SGLRKKVTVF
101: QQPHYLANFV QSTFNALPAD QVKGATIVVS GDGRYFSKDA VQIIAKMAAA NGVRRVWVGQ DSLLSTPAVS AIIRERISAD GAKATGAFIL TASHNPGGPT
201: EDFGIKYNME NGGPAPESVT DKIFSNTKTI TEYLIAEDLP DVDISVTGVT SFTGPEGPFD VDVFDSATDY IKLMKTIFDF ESIKKLLASP KFSFCFDGLH
301: GVAGAYAKRI FVDELGASES SLLNCVPKED FGGGHPDPNL TYAKELVDRM GLGKTSNGEP PEFGAAADGD ADRNMVLGKR FFVTPSDSVA IIAANAVQSI
401: PYFASGLKGV ARSMPTSAAL DVVAKNLNLK FFEVPTGWKF FGNLMDAGMC SVCGEESFGT GSDHIREKDG IWAVLAWLSI LAYKNKDNLG GDKLVTVEDI
501: VLQHWGTYGR HYYTRYDYEN VDAEAAKELM ANLVKMQASL PDVNKSIKEI QPAVADVVSA DEFEYKDPVD GSVSKHQGIR YLFGDGSRLV FRLSGTGSVG
601: ATIRIYIEQY EKDSSKTGRE SSDALSPLVD VALKLSKIQE YTGRSAPTVI T

Best Arabidopsis Sequence Match ( AT1G70730.2 )
(BLAST)

001: MFLLVTSCFL PDSGSSVKVS LFIFGVSLVS TSPIDGQKPG TSGLRKKVKV FKQPNYLENF VQATFNALTT EKVKGATLVV SGDGRYYSEQ AIQIIVKMAA
101: ANGVRRVWVG QNSLLSTPAV SAIIRERVGA DGSKATGAFI LTASHNPGGP TEDFGIKYNM ENGGPAPESI TDKIYENTKT IKEYPIAEDL PRVDISTIGI
201: TSFEGPEGKF DVEVFDSADD YVKLMKSIFD FESIKKLLSY PKFTFCYDAL HGVAGAYAHR IFVEELGAPE SSLLNCVPKE DFGGGHPDPN LTYAKELVAR
301: MGLSKTDDAG GEPPEFGAAA DGDADRNMIL GKRFFVTPSD SVAIIAANAV GAIPYFSSGL KGVARSMPTS AALDVVAKNL GLKFFEVPTG WKFFGNLMDA
401: GMCSVCGEES FGTGSDHIRE KDGIWAVLAW LSILAHKNKE TLDGNAKLVT VEDIVRQHWA TYGRHYYTRY DYENVDATAA KELMGLLVKL QSSLPEVNKI
501: IKGIHPEVAN VASADEFEYK DPVDGSVSKH QGIRYLFEDG SRLVFRLSGT GSEGATIRLY IEQYEKDASK IGRDSQDALG PLVDVALKLS KMQEFTGRSS
601: PTVIT

Arabidopsis Description

PGM2Phosphoglucomutase/phosphomannomutase family protein [Source:UniProtKB/TrEMBL;Acc:F4I6W4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.