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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 4
  • plastid 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH39114
KRH41782
KRH48600
KRH60482

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G23190.1 KRH39114 AT1G18040.1 20706207
AT1G23190.1 KRH41782 AT1G18040.1 20706207
AT1G23190.1 KRH48600 AT1G18040.1 20706207
AT1G23190.1 KRH60482 AT1G18040.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH41685 Soybean nucleus 98.45 98.45
Bra016357.1-P Field mustard plastid 85.74 85.59
CDY41458 Canola plastid 85.57 85.42
Solyc04g045340.2.1 Tomato plastid 85.57 85.42
AT1G23190.1 Thale cress plastid 85.22 85.08
GSMUA_Achr8P30900_001 Banana cytosol 84.36 84.22
Os03t0712700-01 Rice plasma membrane 83.85 83.85
KRH65519 Soybean cytosol 36.08 82.68
VIT_01s0011g05370.t01 Wine grape cytosol, mitochondrion 87.46 81.96
CDX91702 Canola plastid 85.74 81.27
GSMUA_Achr2P06680_001 Banana cytosol 80.41 81.11
Bra024568.1-P Field mustard plastid 78.18 78.04
CDY04740 Canola plastid 76.98 76.84
CDX91703 Canola endoplasmic reticulum 21.48 76.69
Zm00001d013428_P002 Maize plasma membrane 83.85 75.08
AT1G70730.3 Thale cress plastid 85.4 75.08
Zm00001d033746_P003 Maize plastid 83.51 75.0
EER93574 Sorghum plastid 83.33 74.73
CDY21421 Canola plastid 85.4 73.74
HORVU4Hr1G007620.2 Barley plasma membrane 81.27 72.66
TraesCS4A01G267000.1 Wheat plastid 81.27 72.55
TraesCS4B01G047300.1 Wheat plastid 80.76 72.53
TraesCS4D01G047300.1 Wheat plastid 79.9 71.54
Zm00001d036664_P001 Maize cytosol, mitochondrion 73.88 69.47
Zm00001d036666_P001 Maize mitochondrion 67.35 65.44
KRH65565 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole 18.04 65.22
KRH35404 Soybean nucleus 58.08 53.82
KRG91417 Soybean nucleus 57.22 53.03
Protein Annotations
KEGG:00520+5.4.2.10EntrezGene:100802789MapMan:3.1.2.5Gene3D:3.30.310.50Gene3D:3.40.120.10InterPro:A-D-PHexomutase_C
InterPro:A-D-PHexomutase_CSInterPro:A-D-PHexomutase_C_sfInterPro:A-D-PHexomutase_a/b/a-IInterPro:A-D-PHexomutase_a/b/a-I/II/IIIInterPro:A-D-PHexomutase_a/b/a-IIInterPro:A-D-PHexomutase_a/b/a-III
EMBL:ACUP02003364InterPro:Alpha-D-phosphohexomutase_SFEnsemblPlantsGene:GLYMA_05G237000GO:GO:0000287GO:GO:0003674GO:GO:0003824
GO:GO:0004614GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005975GO:GO:0005978GO:GO:0006006GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009536GO:GO:0009570GO:GO:0009590
GO:GO:0009605GO:GO:0009628GO:GO:0009987GO:GO:0010319GO:GO:0016868GO:GO:0019252
GO:GO:0019388GO:GO:0046872GO:GO:0071704UniProt:I1K5M9EnsemblPlants:KRH60387ProteinID:KRH60387
ProteinID:KRH60387.1ProteinID:KRH60388.1PFAM:PF00408PFAM:PF02878PFAM:PF02879PFAM:PF02880
PRINTS:PR00509ScanProsite:PS00710PANTHER:PTHR22573PANTHER:PTHR22573:SF47MetaCyc:PWY-6749SUPFAM:SSF53738
SUPFAM:SSF55957UniParc:UPI000233A87FSEG:seg:::
Description
hypothetical protein
Coordinates
chr5:-:41337418..41344545
Molecular Weight (calculated)
63517.2 Da
IEP (calculated)
5.201
GRAVY (calculated)
-0.190
Length
582 amino acids
Sequence
(BLAST)
001: MVLFNVSRVE TTPFDGQKPG TSGLRKKVKV FVQPHYLHNF VQSTFNALTV EKVRGATLVV SGDGRYFSKE AIQIITKMSA ANGVRRVWIG QNGLLSTPAV
101: SAVIRERVGA DGSRATGAFI LTASHNPGGP HEDFGIKYNM ENGGPAPEGI TDKIYENTTT INEYLIASDL PDVDITTTGV TSFTGPEGPF DVEVFDSASD
201: YIKLMKSIFD FESIRKLLSS PKFTFCYDAL HGVGGAYAKS IFVDELGAQE SSLLNCTPKE DFGGGHPDPN LTYAKELVAR MGLGKSEPQD DPPEFGAASD
301: GDADRNMILG KRFFVTPSDS VAIIAANAVE AIPYFSAGLK GVARSMPTSA ALDVVAKHLN LKFFEVPTGW KFFGNLMDAG LCSVCGEESF GTGSDHIREK
401: DGIWAVLAWL SILAYKNKDK LEDKLVTVED IVRQHWATYG RHYYTRYDYE NVDAGAAKEL MAYLVKLQSS LSEVNQIIKG IRSDVSNVVH GDEFEYNDPV
501: DGSISSHQGI RYLFEDGSRL IFRLSGTGSE GATIRLYIEQ YEKDPSKIGR LSNEALAPLV EVALKLSKME EFTGRSAPTV IT
Best Arabidopsis Sequence Match ( AT1G23190.1 )
(BLAST)
001: MVFKVSTVST SPIDGQKPGT SGLRKKVKVF KQPNYLENFV QATFNALTAE KVKGATLVVS GDGRYYSKDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGAFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAQDLP NVDISAVGVT SFEGPEGKFD VEVFDPADDY
201: VKLMKSIFDF EAIRKLLSSP KFTFCYDALH GVAGAYAHRI FVEELGAQES ALLNCTPKED FGGGHPDPNL TYAKELVARM GLGKSDTGGE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAIGA IPYFSSGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWMS ILAHKNKGNI DGNAKLVSVE DIVRQHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVASVA SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESQEALSPL VDLALKLSKM EEFTGRSAPT VIT
Arabidopsis Description
PGM3Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.