Factsheet for TraesCS4B01G047300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
extracellular: 19786127
plastid: 22160430
golgi: 23128297
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G245600.1
TraesCS1B01G256600.1
TraesCS1D01G245300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	TraesCS1A01G245600.1	AT1G18040.1	20706207
AT1G23190.1	TraesCS1B01G256600.1	AT1G18040.1	20706207
AT1G23190.1	TraesCS1D01G245300.1	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G267000.1	Wheat	plastid	96.3	95.71
TraesCS4D01G047300.1	Wheat	plastid	95.99	95.69
HORVU4Hr1G007620.2	Barley	plasma membrane	93.21	92.78
Os03t0712700-01	Rice	plasma membrane	80.71	89.86
Zm00001d033746_P003	Maize	plastid	83.64	83.64
Zm00001d013428_P002	Maize	plasma membrane	83.64	83.38
GSMUA_Achr8P30900_001	Banana	cytosol	75.0	83.36
EER93574	Sorghum	plastid	82.25	82.13
Bra016357.1-P	Field mustard	plastid	73.61	81.82
CDY41458	Canola	plastid	73.3	81.48
GSMUA_Achr2P06680_001	Banana	cytosol	72.53	81.46
AT1G23190.1	Thale cress	plastid	73.15	81.3
KRH60387	Soybean	endoplasmic reticulum	72.53	80.76
KRH41685	Soybean	nucleus	72.38	80.58
Solyc04g045340.2.1	Tomato	plastid	71.91	79.93
CDX91702	Canola	plastid	72.99	77.04
KRH65519	Soybean	cytosol	29.78	75.98
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	72.38	75.52
Bra024568.1-P	Field mustard	plastid	67.44	74.96
CDY04740	Canola	plastid	66.67	74.1
AT1G70730.3	Thale cress	plastid	75.62	74.02
Zm00001d036664_P001	Maize	cytosol, mitochondrion	70.52	73.83
CDY21421	Canola	plastid	73.61	70.77
Zm00001d036666_P001	Maize	mitochondrion	64.81	70.12
CDX91703	Canola	endoplasmic reticulum	16.98	67.48
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	15.59	62.73

Protein Annotations

KEGG:00520+5.4.2.10	MapMan:3.1.2.5	Gene3D:3.30.310.50	Gene3D:3.40.120.10	InterPro:A-D-PHexomutase_C	InterPro:A-D-PHexomutase_CS
InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II	InterPro:A-D-PHexomutase_a/b/a-III	InterPro:Alpha-D-phosphohexomutase_SF
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016868	GO:GO:0071704	PFAM:PF00408	PFAM:PF02878	PFAM:PF02879
PFAM:PF02880	PRINTS:PR00509	ScanProsite:PS00710	PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	SUPFAM:SSF53738
SUPFAM:SSF55957	EnsemblPlantsGene:TraesCS4B01G047300	EnsemblPlants:TraesCS4B01G047300.1	TIGR:cd03085	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:34715153..34721695

Molecular Weight (calculated)

69992.2 Da

IEP (calculated)

7.942

GRAVY (calculated)

-0.175

Length

648 amino acids

Sequence
(BLAST)

001: MIPLCASSSP STPAIIAPRP RRLRHRTTTP SLPHSRSPHR LHLLASSSTP RPLARAHRPG SVVTAAEMVF SVTKKETKPY EGQKPGTSGL RKKVTVFQQP
101: HYLANFVQST FNALPADQVK GATIVVSGDG RYFSKDAVQI IAKMAAANGV RRVWVGQDSL LSTPAVSAII RERISADGAK ATGAFILTAS HNPGGPTEDF
201: GIKYNMGNGG PAPESVTDKI FSNTKTVTEY LIAEDLPNVD ISVIGVTSFT GPEGPFDVDV FDSATDYIKL MKTIFDFESI KKLLASPKFS FCFDGLHGVA
301: GAYAKRMFVD ELGASESSLL NCVPKEDFGG GHPDPNLTYA KELVDRMGLG KTSNVEPPEF GAAADGDADR NMVLGKRFFV TPSDSVAIIA ANAVQSIPYF
401: ASGLKGVARS MPTSAALDVV AKNLNLKFFE VPTGWKFFGN LMDAGMCSVC GEESFGTGSD HIREKDGIWA VLAWLSILAY KNKDNLGGDK LVTVEDIVLQ
501: HWATYGRHYY TRYDYENVDA EAAKELMANL VKMQSSLSDV NKSIKEIQPT VADVVSADEF EYKDPVDGSV SKHQGIRYLF GDGSRLVFRL SGTGSVGATI
601: RIYIEQYEKD SSKTGRASSD ALSPLVDVAL KFSKIKEYTG RSAPTVIT

Best Arabidopsis Sequence Match ( AT1G70730.2 )
(BLAST)

001: MFLLVTSCFL PDSGSSVKVS LFIFGVSLVS TSPIDGQKPG TSGLRKKVKV FKQPNYLENF VQATFNALTT EKVKGATLVV SGDGRYYSEQ AIQIIVKMAA
101: ANGVRRVWVG QNSLLSTPAV SAIIRERVGA DGSKATGAFI LTASHNPGGP TEDFGIKYNM ENGGPAPESI TDKIYENTKT IKEYPIAEDL PRVDISTIGI
201: TSFEGPEGKF DVEVFDSADD YVKLMKSIFD FESIKKLLSY PKFTFCYDAL HGVAGAYAHR IFVEELGAPE SSLLNCVPKE DFGGGHPDPN LTYAKELVAR
301: MGLSKTDDAG GEPPEFGAAA DGDADRNMIL GKRFFVTPSD SVAIIAANAV GAIPYFSSGL KGVARSMPTS AALDVVAKNL GLKFFEVPTG WKFFGNLMDA
401: GMCSVCGEES FGTGSDHIRE KDGIWAVLAW LSILAHKNKE TLDGNAKLVT VEDIVRQHWA TYGRHYYTRY DYENVDATAA KELMGLLVKL QSSLPEVNKI
501: IKGIHPEVAN VASADEFEYK DPVDGSVSKH QGIRYLFEDG SRLVFRLSGT GSEGATIRLY IEQYEKDASK IGRDSQDALG PLVDVALKLS KMQEFTGRSS
601: PTVIT

Arabidopsis Description

PGM2Phosphoglucomutase/phosphomannomutase family protein [Source:UniProtKB/TrEMBL;Acc:F4I6W4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.