CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81858
CDX83876
CDX96739
CDY21722

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	CDX81858	AT1G18040.1	20706207
AT1G23190.1	CDX83876	AT1G18040.1	20706207
AT1G23190.1	CDX96739	AT1G18040.1	20706207
AT1G23190.1	CDY21722	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024568.1-P	Field mustard	plastid	98.8	98.8
CDX91703	Canola	endoplasmic reticulum	24.36	87.12
CDY41458	Canola	plastid	86.45	86.45
AT1G23190.1	Thale cress	plastid	85.76	85.76
CDY21421	Canola	plastid	98.63	85.31
CDX91702	Canola	plastid	86.28	81.92
KRH60387	Soybean	endoplasmic reticulum	76.84	76.98
KRH41685	Soybean	nucleus	76.67	76.8
Solyc04g045340.2.1	Tomato	plastid	75.81	75.81
GSMUA_Achr8P30900_001	Banana	cytosol	75.13	75.13
KRH65519	Soybean	cytosol	32.59	74.8
Os03t0712700-01	Rice	plasma membrane	74.44	74.57
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	78.73	73.91
GSMUA_Achr2P06680_001	Banana	cytosol	72.56	73.31
Zm00001d033746_P003	Maize	plastid	74.44	66.98
Zm00001d013428_P002	Maize	plasma membrane	74.44	66.77
TraesCS4B01G047300.1	Wheat	plastid	74.1	66.67
HORVU4Hr1G007620.2	Barley	plasma membrane	74.27	66.51
EER93574	Sorghum	plastid	73.93	66.41
TraesCS4A01G267000.1	Wheat	plastid	73.93	66.1
TraesCS4D01G047300.1	Wheat	plastid	73.24	65.69
Zm00001d036664_P001	Maize	cytosol, mitochondrion	65.69	61.87
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	16.47	59.63
Zm00001d036666_P001	Maize	mitochondrion	59.52	57.93
CDY64652	Canola	plastid	51.97	48.17
CDY00500	Canola	plastid	52.14	47.87
CDY52135	Canola	extracellular, plasma membrane	8.75	32.9

Protein Annotations

KEGG:00520+5.4.2.10	MapMan:3.1.2.5	Gene3D:3.30.310.50	Gene3D:3.40.120.10	InterPro:A-D-PHexomutase_C	InterPro:A-D-PHexomutase_CS
InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II	InterPro:A-D-PHexomutase_a/b/a-III	GO:A0A078ES56
InterPro:Alpha-D-phosphohexomutase_SF	EnsemblPlants:CDY04740	ProteinID:CDY04740	ProteinID:CDY04740.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016868
GO:GO:0071704	EnsemblPlantsGene:GSBRNA2T00119392001	PFAM:PF00408	PFAM:PF02878	PFAM:PF02879	PFAM:PF02880
PRINTS:PR00509	ScanProsite:PS00710	PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	MetaCyc:PWY-6749	SUPFAM:SSF53738
SUPFAM:SSF55957	UniParc:UPI0004EDB500	SEG:seg	:	:	:

Description

BnaC05g18490D

Coordinates

chrLK031957:-:274440..278695

Molecular Weight (calculated)

63501.4 Da

IEP (calculated)

6.168

GRAVY (calculated)

-0.238

Length

583 amino acids

Sequence
(BLAST)

001: MVFKVSLVST SPIDGQKPGT SGLRKKVKVF KQPNYLQNFV QSTFNALTPA KVKGATLVVS GDGRYYSNDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGPD GSKATGGFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAEDLP IVDISAIGVS SFEGPEGKFD VEVFDSADDY
201: VKLMKSIFDF ESIRKLLSSP KFSFCYDAMH GVAGAYAHRI FVEELGSQEN SLLNCVPKED FGGGHPDPNL TYAKELVARM GLRQSDTGVE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAVGA IPYFSTGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWLS ILAHKNKETL DGDAKLVTVE DIVRKHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKMVK GIRSDVANVS SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESHEALSPL VDIALKLSKM EEFTGRSAPT VIT

Best Arabidopsis Sequence Match ( AT1G23190.1 )
(BLAST)

001: MVFKVSTVST SPIDGQKPGT SGLRKKVKVF KQPNYLENFV QATFNALTAE KVKGATLVVS GDGRYYSKDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGAFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAQDLP NVDISAVGVT SFEGPEGKFD VEVFDPADDY
201: VKLMKSIFDF EAIRKLLSSP KFTFCYDALH GVAGAYAHRI FVEELGAQES ALLNCTPKED FGGGHPDPNL TYAKELVARM GLGKSDTGGE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAIGA IPYFSSGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWMS ILAHKNKGNI DGNAKLVSVE DIVRQHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVASVA SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESQEALSPL VDLALKLSKM EEFTGRSAPT VIT

Arabidopsis Description

PGM3Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.