CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES18176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	EES18176	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0712700-01	Rice	plasma membrane	85.21	95.02
Zm00001d033746_P003	Maize	plastid	89.83	89.97
Zm00001d013428_P002	Maize	plasma membrane	89.83	89.69
GSMUA_Achr8P30900_001	Banana	cytosol	77.2	85.93
GSMUA_Achr2P06680_001	Banana	cytosol	74.58	83.88
Solyc04g045340.2.1	Tomato	plastid	75.04	83.53
KRH60387	Soybean	endoplasmic reticulum	74.73	83.33
Bra016357.1-P	Field mustard	plastid	74.42	82.85
KRH41685	Soybean	nucleus	74.11	82.65
AT1G23190.1	Thale cress	plastid	74.11	82.5
CDY41458	Canola	plastid	74.11	82.5
TraesCS4B01G047300.1	Wheat	plastid	82.13	82.25
TraesCS4A01G267000.1	Wheat	plastid	82.28	81.9
HORVU4Hr1G007620.2	Barley	plasma membrane	82.13	81.87
TraesCS4D01G047300.1	Wheat	plastid	81.36	81.23
Zm00001d036664_P001	Maize	cytosol, mitochondrion	76.58	80.29
CDX91702	Canola	plastid	74.11	78.34
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	73.81	77.13
Zm00001d036666_P001	Maize	mitochondrion	70.42	76.29
Bra024568.1-P	Field mustard	plastid	67.03	74.61
KRH65519	Soybean	cytosol	28.97	74.02
CDY04740	Canola	plastid	66.41	73.93
AT1G70730.3	Thale cress	plastid	75.35	73.87
CDY21421	Canola	plastid	73.34	70.62
CDX91703	Canola	endoplasmic reticulum	17.72	70.55
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	14.64	59.01
EES03286	Sorghum	mitochondrion, plastid	52.23	55.76

Protein Annotations

KEGG:00520+5.4.2.10	MapMan:3.1.2.5	Gene3D:3.30.310.50	Gene3D:3.40.120.10	EntrezGene:8063383	InterPro:A-D-PHexomutase_C
InterPro:A-D-PHexomutase_CS	InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II	InterPro:A-D-PHexomutase_a/b/a-III
InterPro:Alpha-D-phosphohexomutase_SF	UniProt:C5WN27	EnsemblPlants:EER93574	ProteinID:EER93574	ProteinID:EER93574.1	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004614	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0005978	GO:GO:0006006
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009536
GO:GO:0009570	GO:GO:0009590	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010319
GO:GO:0016868	GO:GO:0019252	GO:GO:0019388	GO:GO:0046872	GO:GO:0071704	PFAM:PF00408
PFAM:PF02878	PFAM:PF02879	PFAM:PF02880	PRINTS:PR00509	ScanProsite:PS00710	PANTHER:PTHR22573
PANTHER:PTHR22573:SF47	MetaCyc:PWY-6749	EnsemblPlantsGene:SORBI_3001G116500	SUPFAM:SSF53738	SUPFAM:SSF55957	unigene:Sbi.17825
UniParc:UPI0001A82847	RefSeq:XP_002466576.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:9076265..9082559

Molecular Weight (calculated)

70393.8 Da

IEP (calculated)

7.515

GRAVY (calculated)

-0.170

Length

649 amino acids

Sequence
(BLAST)

001: MIHPLVLSLP SPAIISPRPR RHRHHTTTPP PSLPSHSRSL HHHRFLRVTP LVASRGGQRR IVRGATMGLF TVTKKATTPF EGQKPGTSGL RKKVTVFQQP
101: HYLQNFVQST FNALPADQVK GATIVVSGDG RYFSKDAVQI ITKMAAANGA RRVWVGLNSL MSTPAVSAVI RERVGADGSK ATGAFILTAS HNPGGPTEDF
201: GIKYNMGNGG PAPESVTDKI FSNTTTISEY LISEDLPDVD ISVVGVTSFS GPEGPFDVDV FDSSVDYIKL MKTIFDFEAI KKLLTSPKFT FCYDALHGVA
301: GAYAKHIFVE ELGADESSLL NCVPKEDFGG GHPDPNLTYA KELVERMGLG KSSSNVEPPE FGAAADGDAD RNMILGKRFF VTPSDSVAII AANAVQSIPY
401: FASGLKGVAR SMPTSAALDV VAKNLNLKFF EVPTGWKFFG NLMDAGMCSI CGEESFGTGS DHIREKDGIW AVLAWLSIIA FKNKDNLGGD KLVSVEDIVR
501: QHWATYGRHY YTRYDYENVD AGAAKELMAN LVSMQSSLSD VNKLIKEIRS DVSEVVAADE FEYKDPVDGS VSKHQGIRYL FGDGSRLVFR LSGTGSVGAT
601: IRVYIEQYEK DSSKIGRDSQ DALAPLVDVA LKLSKMQEYT GRSAPTVIT

Best Arabidopsis Sequence Match ( AT1G23190.1 )
(BLAST)

001: MVFKVSTVST SPIDGQKPGT SGLRKKVKVF KQPNYLENFV QATFNALTAE KVKGATLVVS GDGRYYSKDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGAFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAQDLP NVDISAVGVT SFEGPEGKFD VEVFDPADDY
201: VKLMKSIFDF EAIRKLLSSP KFTFCYDALH GVAGAYAHRI FVEELGAQES ALLNCTPKED FGGGHPDPNL TYAKELVARM GLGKSDTGGE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAIGA IPYFSSGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWMS ILAHKNKGNI DGNAKLVSVE DIVRQHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVASVA SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESQEALSPL VDLALKLSKM EEFTGRSAPT VIT

Arabidopsis Description

PGM3Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.