CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044211_P001	Maize	plastid	87.83	88.41
Os10t0189100-01	Rice	plastid	86.84	86.7
GSMUA_Achr8P19110_001	Banana	plastid	79.11	76.71
VIT_16s0022g02320.t01	Wine grape	plastid	77.47	76.71
Bra028278.1-P	Field mustard	plastid	76.97	74.52
CDY64652	Canola	plastid	76.64	74.09
AT5G51820.1	Thale cress	plastid	75.66	73.84
KRH35404	Soybean	nucleus	76.15	73.73
CDY00500	Canola	plastid	76.64	73.39
Solyc03g006870.2.1	Tomato	plastid	76.15	73.26
KRG91417	Soybean	nucleus	75.0	72.61
EER93574	Sorghum	plastid	55.76	52.23

Protein Annotations

KEGG:00520+5.4.2.10	MapMan:3.2.2.2	Gene3D:3.30.310.50	Gene3D:3.40.120.10	EntrezGene:8084835	InterPro:A-D-PHexomutase_C
InterPro:A-D-PHexomutase_CS	InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II	InterPro:A-D-PHexomutase_a/b/a-III
InterPro:Alpha-D-phosphohexomutase_SF	UniProt:C5XR33	EnsemblPlants:EES03286	ProteinID:EES03286	ProteinID:EES03286.1	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004614	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0005978
GO:GO:0006006	GO:GO:0006091	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009409	GO:GO:0009536	GO:GO:0009570	GO:GO:0009590	GO:GO:0009605
GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010319	GO:GO:0016868	GO:GO:0019252
GO:GO:0019388	GO:GO:0048046	GO:GO:0071704	PFAM:PF00408	PFAM:PF02878	PFAM:PF02879
PFAM:PF02880	PRINTS:PR00509	ScanProsite:PS00710	PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	MetaCyc:PWY-6749
EnsemblPlantsGene:SORBI_3003G222500	SUPFAM:SSF53738	SUPFAM:SSF55957	unigene:Sbi.3873	UniParc:UPI0001A8500B	RefSeq:XP_002458166.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:55858704..55866128

Molecular Weight (calculated)

65971.4 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.165

Length

608 amino acids

Sequence
(BLAST)

001: MPTTHALRLC PLLSTVRSTP PRATAAARQG ASPALLVARC SSAGTPSAAQ ALKINSIPTK PVEGQKTGTS GLRKKVKVFQ QENYLANWIQ ALFNSLPPED
101: YVGATLVLGG DGRYFNKEAA QIIIKIAAGN GVQKIIVGRD GLLSTPAVSA VIRKREANGG FIMSASHNPG GPDNDWGIKF NYSSGQPAPE TITDQIYGNT
201: LSISEIKTAG IPDTDLSSVG VVSYGDFTIE VIDPVSDYLE LMENVFDFQL IKDLLSRPDF RFIFDAMHAV TGAYAGPIFV EKLGADPDCI LNGVPLEDFG
301: NGHPDPNLTY AKELVFTMFG THAPDFGAAS DGDGDRNMIL GKRFFITPSD SVAIIAANAQ AAIPYFQFGT KGLARSMPTS GALDRVAKKL NVPFFEVPTG
401: WKFFGNLMDA GKLSICGEES FGTGSDHIRE KDGIWAVLAW LSILAHRNKD KKVGERLVSV EDIAMEHWKT YGRNFFSRYD YEECESQSAN KMMDHLKDVI
501: ANSKPGEKYG DYTLQFADDF SYTDPVDGST VSKQGLRFVF TDGSRIIFRL SGTGSAGATI RLYIEQFESD ISKHSLDAQT ALKPLIDLAL SVSKLKDFTG
601: RDKPTVIT

Best Arabidopsis Sequence Match ( AT5G51820.1 )
(BLAST)

001: MTSTYTRFDT VFLFSRFAGA KYSPLLPSPS FTLSTSGIHI RTKPNSRFHS IIASSSSSSV VAGTDSIEIK SLPTKPIEGQ KTGTSGLRKK VKVFMEDNYL
101: ANWIQALFNS LPLEDYKNAT LVLGGDGRYF NKEASQIIIK IAAGNGVGQI LVGKEGILST PAVSAVIRKR KANGGFIMSA SHNPGGPEYD WGIKFNYSSG
201: QPAPETITDK IYGNTLSISE IKVAEIPDID LSQVGVTKYG NFSVEVIDPV SDYLELMEDV FDFDLIRGLL SRSDFGFMFD AMHAVTGAYA KPIFVDNLGA
301: KPDSISNGVP LEDFGHGHPD PNLTYAKDLV DVMYRDNGPD FGAASDGDGD RNMVLGNKFF VTPSDSVAII AANAQEAIPY FRAGPKGLAR SMPTSGALDR
401: VAEKLKLPFF EVPTGWKFFG NLMDAGKLSI CGEESFGTGS DHIREKDGIW AVLAWLSILA HRNKDTKPGD KLVSVADVVK EYWATYGRNF FSRYDYEECE
501: SEGANKMIEY LREILSKSKA GDVYGNYVLQ FADDFSYTDP VDGSVASKQG VRFVFTDGSR IIFRLSGTGS AGATVRIYIE QFEPDVSKHD VDAQIALKPL
601: IDLALSVSKL KDFTGREKPT VIT

Arabidopsis Description

PGMPPhosphoglucomutase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.