Factsheet for VIT_01s0011g05370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0006g02280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	VIT_14s0006g02280.t01	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60387	Soybean	endoplasmic reticulum	81.96	87.46
KRH41685	Soybean	nucleus	81.48	86.94
Bra016357.1-P	Field mustard	plastid	80.68	85.93
AT1G23190.1	Thale cress	plastid	80.52	85.76
CDY41458	Canola	plastid	80.35	85.59
GSMUA_Achr8P30900_001	Banana	cytosol	79.07	84.22
Solyc04g045340.2.1	Tomato	plastid	78.42	83.53
Os03t0712700-01	Rice	plasma membrane	77.78	82.99
GSMUA_Achr2P06680_001	Banana	cytosol	76.97	82.84
CDX91702	Canola	plastid	80.35	81.27
Bra024568.1-P	Field mustard	plastid	74.72	79.59
CDY04740	Canola	plastid	73.91	78.73
AT1G70730.3	Thale cress	plastid	82.45	77.34
CDX91703	Canola	endoplasmic reticulum	20.29	77.3
KRH65519	Soybean	cytosol	31.4	76.77
CDY21421	Canola	plastid	81.16	74.78
Zm00001d013428_P002	Maize	plasma membrane	77.94	74.46
Zm00001d033746_P003	Maize	plastid	77.62	74.38
EER93574	Sorghum	plastid	77.13	73.81
HORVU4Hr1G007620.2	Barley	plasma membrane	76.33	72.81
TraesCS4B01G047300.1	Wheat	plastid	75.52	72.38
TraesCS4A01G267000.1	Wheat	plastid	75.52	71.93
TraesCS4D01G047300.1	Wheat	plastid	74.72	71.38
Zm00001d036664_P001	Maize	cytosol, mitochondrion	68.76	68.98
Zm00001d036666_P001	Maize	mitochondrion	62.8	65.11
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	15.78	60.87
VIT_16s0022g02320.t01	Wine grape	plastid	54.27	54.89

Protein Annotations

KEGG:00520+5.4.2.10	EntrezGene:100266376	wikigene:100266376	MapMan:3.1.2.5	Gene3D:3.30.310.50	Gene3D:3.40.120.10
InterPro:A-D-PHexomutase_C	InterPro:A-D-PHexomutase_CS	InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II
InterPro:A-D-PHexomutase_a/b/a-III	InterPro:Alpha-D-phosphohexomutase_SF	ProteinID:CCB50806	ProteinID:CCB50806.1	UniProt:F6HFF7	EMBL:FN595752
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004614	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0005978
GO:GO:0006006	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009536	GO:GO:0009570	GO:GO:0009590	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987
GO:GO:0010319	GO:GO:0016868	GO:GO:0019252	GO:GO:0019388	GO:GO:0071704	EntrezGene:LOC100266376
wikigene:LOC100266376	PFAM:PF00408	PFAM:PF02878	PFAM:PF02879	PFAM:PF02880	PRINTS:PR00509
ScanProsite:PS00710	PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	SUPFAM:SSF53738	SUPFAM:SSF55957	TIGR:TC55319
TIGR:TC60100	UniParc:UPI0002108479	ArrayExpress:VIT_01s0011g05370	EnsemblPlantsGene:VIT_01s0011g05370	EnsemblPlants:VIT_01s0011g05370.t01	unigene:Vvi.24275
unigene:Vvi.75	RefSeq:XP_002284729	RefSeq:XP_002284729.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:4989645..5011743

Molecular Weight (calculated)

67930.8 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.237

Length

621 amino acids

Sequence
(BLAST)

001: MEALSKGSLK MRELRRSSSL MCGPNGTQTP PYFSRWEAMV MFKVSRVTTS PFDGQKPGTS GLRKKVKVFK QQNYLHNFVQ STFNALSQDK IRGMTLVVSG
101: DGRYFSKDAI QIIIKMAAAN GVRSVWVGQN GLLSTPAVSA VIRERVGKDG TKASGAFILT ASHNPGGPNE DFGIKYNMEN GGPAQEAITD KIYENTKSIK
201: EYIIAEDLPD VDISAIGITN FTGPEGQFDV EVFDSAFDYV KLMKSIFDFQ SIQKLLSSPK FTFCYDALHG VGGAYAKRIF VEELGAQESS LLNCVPKEDF
301: GGGHPDPNLT YAKELVACMG LGKSDAKNEP PEFGAASDGD ADRNMILGKR FFVTPSDSVA IIAANAVDAI PYFSAGLKGV ARSMPTSAAL DVVAKHLNLK
401: FFEVPTGWKF FGNLMDAGLC SICGEESFGT GSDHIREKDG IWAVLAWLSI LAYENKENLG GAKLVTVEEI VRNHWATYGR HYYTRYDYEN VDAGAAKELM
501: AYLVKLQSSL PEVNKIIKGI HSDVSNVAKA DEFEYKDPVD GSISKHQGIR YMFEDGSRLI FRLSGTGSEG ATIRVYIEQY EKDSSKTGRD SQEALGPLVE
601: VALKLSKMQE FTGRSAPTVI T

Best Arabidopsis Sequence Match ( AT1G70730.3 )
(BLAST)

001: MFLLVTSCFL PDSGSSVKVS LFIFGTKRDP TKKKNEKRRA TRVTFSFSLF ISFPQTHCVK RLLFYHLQAY SIFFRFEMVS FKVSLVSTSP IDGQKPGTSG
101: LRKKVKVFKQ PNYLENFVQA TFNALTTEKV KGATLVVSGD GRYYSEQAIQ IIVKMAAANG VRRVWVGQNS LLSTPAVSAI IRERVGADGS KATGAFILTA
201: SHNPGGPTED FGIKYNMENG GPAPESITDK IYENTKTIKE YPIAEDLPRV DISTIGITSF EGPEGKFDVE VFDSADDYVK LMKSIFDFES IKKLLSYPKF
301: TFCYDALHGV AGAYAHRIFV EELGAPESSL LNCVPKEDFG GGHPDPNLTY AKELVARMGL SKTDDAGGEP PEFGAAADGD ADRNMILGKR FFVTPSDSVA
401: IIAANAVGAI PYFSSGLKGV ARSMPTSAAL DVVAKNLGLK FFEVPTGWKF FGNLMDAGMC SVCGEESFGT GSDHIREKDG IWAVLAWLSI LAHKNKETLD
501: GNAKLVTVED IVRQHWATYG RHYYTRYDYE NVDATAAKEL MGLLVKLQSS LPEVNKIIKG IHPEVANVAS ADEFEYKDPV DGSVSKHQGI RYLFEDGSRL
601: VFRLSGTGSE GATIRLYIEQ YEKDASKIGR DSQDALGPLV DVALKLSKMQ EFTGRSSPTV IT

Arabidopsis Description

PGM2Phosphoglucomutase/phosphomannomutase family protein [Source:UniProtKB/TrEMBL;Acc:F4I6W4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.