CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81858
CDX83876
CDX96739
CDY21722

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	CDX81858	AT1G18040.1	20706207
AT1G23190.1	CDX83876	AT1G18040.1	20706207
AT1G23190.1	CDX96739	AT1G18040.1	20706207
AT1G23190.1	CDY21722	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024568.1-P	Field mustard	plastid	86.35	99.83
CDY04740	Canola	plastid	85.31	98.63
CDY41458	Canola	plastid	82.34	95.2
AT1G23190.1	Thale cress	plastid	81.75	94.51
CDX91702	Canola	plastid	82.05	90.07
CDX91703	Canola	endoplasmic reticulum	20.92	86.5
KRH60387	Soybean	endoplasmic reticulum	73.74	85.4
KRH41685	Soybean	nucleus	73.59	85.22
GSMUA_Achr8P30900_001	Banana	cytosol	72.11	83.36
Solyc04g045340.2.1	Tomato	plastid	72.11	83.36
Os03t0712700-01	Rice	plasma membrane	71.22	82.47
GSMUA_Achr2P06680_001	Banana	cytosol	69.88	81.63
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	74.78	81.16
KRH65519	Soybean	cytosol	28.34	75.2
Zm00001d033746_P003	Maize	plastid	71.07	73.92
TraesCS4B01G047300.1	Wheat	plastid	70.77	73.61
HORVU4Hr1G007620.2	Barley	plasma membrane	71.07	73.58
Zm00001d013428_P002	Maize	plasma membrane	70.92	73.54
EER93574	Sorghum	plastid	70.62	73.34
TraesCS4A01G267000.1	Wheat	plastid	70.62	73.01
TraesCS4D01G047300.1	Wheat	plastid	70.03	72.62
Zm00001d036664_P001	Maize	cytosol, mitochondrion	63.5	69.14
Zm00001d036666_P001	Maize	mitochondrion	58.16	65.44
KRH65565	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	14.24	59.63
CDY64652	Canola	plastid	50.0	53.58
CDY00500	Canola	plastid	50.15	53.23
CDY52135	Canola	extracellular, plasma membrane	7.72	33.55

Protein Annotations

KEGG:00520+5.4.2.10	MapMan:3.1.2.5	Gene3D:3.30.310.50	Gene3D:3.40.120.10	InterPro:A-D-PHexomutase_C	InterPro:A-D-PHexomutase_CS
InterPro:A-D-PHexomutase_C_sf	InterPro:A-D-PHexomutase_a/b/a-I	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-II	InterPro:A-D-PHexomutase_a/b/a-III	GO:A0A078G7N0
UniProt:A0A078G7N0	InterPro:Alpha-D-phosphohexomutase_SF	EnsemblPlants:CDY21421	ProteinID:CDY21421	ProteinID:CDY21421.1	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016868	GO:GO:0071704	EnsemblPlantsGene:GSBRNA2T00015811001	PFAM:PF00408	PFAM:PF02878	PFAM:PF02879
PFAM:PF02880	PRINTS:PR00509	ScanProsite:PS00710	PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	MetaCyc:PWY-6749
SUPFAM:SSF53738	SUPFAM:SSF55957	UniParc:UPI0004EEDA31	SEG:seg	:	:

Description

BnaA09g30060DBnaA09g30060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7N0]

Coordinates

chrLK032120:+:616527..621364

Molecular Weight (calculated)

73082.9 Da

IEP (calculated)

6.223

GRAVY (calculated)

-0.207

Length

674 amino acids

Sequence
(BLAST)

001: MVFKVSLVST SPIDGQKPGT SGLRKKVKVF KQPNYLHNFV QSTFNALTPE KVKGATLVVS GDGRYYSNDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGGFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTIFF LEFIIIKMAA ANGVRRVWVG KNTLLSTPAV SAVIRERSGA
201: DGSKATGGFI LTASHNPGGP TEDFGIKYNM ENGGPAPESI TDKIYENTKT IKEYPIAEDL PIVDISAIGV SSFEGPEGKF DVEVFDSADD YVKLMKSIFD
301: FESIRKLLSS PKFSFCYDAM HGVAGAYAHR IFVEELGAQE SSLLNCVPKE DFGGGHPDPN LTYAKELVAR MGLGKSDTGV EPPEFGAAAD GDADRNMILG
401: KRFFVTPSDS VAIIAANAVG AIPYFSTGLK GVARSMPTSA ALDVVAKSLN LKFFEVPTGW KFFGNLMDAG MCSVCGEESF GTGSDHIREK DGIWAVLAWL
501: SILAHKNKET LDGDAKLVTV EDIVRKHWAT YGRHYYTRYD YENVDAGKAK ELMEHLVKLQ STIPEVNKMV KGIRSDVANV SSADEFEYKD PVDGSISKHQ
601: GIRYLFEDGS RLVFRLSGTG SEGATIRLYI EQYEKDASKT GRESHEALSP LVDIALKLSK MEEFTGRSAP TVIT

Best Arabidopsis Sequence Match ( AT1G23190.1 )
(BLAST)

001: MVFKVSTVST SPIDGQKPGT SGLRKKVKVF KQPNYLENFV QATFNALTAE KVKGATLVVS GDGRYYSKDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGAFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAQDLP NVDISAVGVT SFEGPEGKFD VEVFDPADDY
201: VKLMKSIFDF EAIRKLLSSP KFTFCYDALH GVAGAYAHRI FVEELGAQES ALLNCTPKED FGGGHPDPNL TYAKELVARM GLGKSDTGGE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAIGA IPYFSSGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWMS ILAHKNKGNI DGNAKLVSVE DIVRQHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVASVA SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESQEALSPL VDLALKLSKM EEFTGRSAPT VIT

Arabidopsis Description

PGM3Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.