CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39114
KRH41782
KRH48600
KRH60482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23190.1	KRH39114	AT1G18040.1	20706207
AT1G23190.1	KRH41782	AT1G18040.1	20706207
AT1G23190.1	KRH48600	AT1G18040.1	20706207
AT1G23190.1	KRH60482	AT1G18040.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65519	Soybean	cytosol	63.35	40.16
KRH60387	Soybean	endoplasmic reticulum	65.22	18.04
KRH41685	Soybean	nucleus	65.22	18.04
GSMUA_Achr8P30900_001	Banana	cytosol	62.11	17.15
GSMUA_Achr2P06680_001	Banana	cytosol	60.87	16.98
Os03t0712700-01	Rice	plasma membrane	60.25	16.67
Bra024568.1-P	Field mustard	plastid	59.63	16.47
CDY04740	Canola	plastid	59.63	16.47
CDY41458	Canola	plastid	58.39	16.12
Bra016357.1-P	Field mustard	plastid	58.39	16.12
Zm00001d036666_P001	Maize	mitochondrion	59.01	15.86
VIT_01s0011g05370.t01	Wine grape	cytosol, mitochondrion	60.87	15.78
Solyc04g045340.2.1	Tomato	plastid	57.14	15.78
AT1G23190.1	Thale cress	plastid	57.14	15.78
TraesCS4B01G047300.1	Wheat	plastid	62.73	15.59
TraesCS4D01G047300.1	Wheat	plastid	62.73	15.54
HORVU4Hr1G007620.2	Barley	plasma membrane	62.11	15.36
Zm00001d036664_P001	Maize	cytosol, mitochondrion	59.01	15.35
TraesCS4A01G267000.1	Wheat	plastid	62.11	15.34
CDX91702	Canola	plastid	58.39	15.31
Zm00001d033746_P003	Maize	plastid	59.63	14.81
Zm00001d013428_P002	Maize	plasma membrane	59.63	14.77
EER93574	Sorghum	plastid	59.01	14.64
CDY21421	Canola	plastid	59.63	14.24
AT1G70730.3	Thale cress	plastid	58.39	14.2
CDX91703	Canola	endoplasmic reticulum	13.66	13.5
KRH35404	Soybean	nucleus	47.83	12.26
KRG91417	Soybean	nucleus	46.58	11.94

Protein Annotations

KEGG:00520+5.4.2.10	Gene3D:3.40.120.10	MapMan:35.1	InterPro:A-D-PHexomutase_a/b/a-I/II/III	InterPro:A-D-PHexomutase_a/b/a-III	UniProt:A0A0R0KER6
EMBL:ACUP02001396	EnsemblPlantsGene:GLYMA_03G046100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004614	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0005978
GO:GO:0006006	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009536	GO:GO:0009570	GO:GO:0009590	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987
GO:GO:0010319	GO:GO:0016868	GO:GO:0019252	GO:GO:0019388	GO:GO:0071704	EnsemblPlants:KRH65565
ProteinID:KRH65565	ProteinID:KRH65565.1	PFAM:PF02880	PANTHER:PTHR22573	PANTHER:PTHR22573:SF47	MetaCyc:PWY-6749
SUPFAM:SSF53738	UniParc:UPI0006EDE10E	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:5868801..5869801

Molecular Weight (calculated)

18176.2 Da

IEP (calculated)

7.384

GRAVY (calculated)

0.080

Length

161 amino acids

Sequence
(BLAST)

001: MMIVSSPKAK RLKLNNCTFI LLNHVSMPTS AVLDVVAKHL NLKFFEIYCS SIHKFFGNLM DTGLCSVCGE ESFGTGSDRI REKDGIWEVL AWLSILAYKN
101: KDKLEDKLVT VEDIKVDAGA AKELMAYLVK LQSSLSEVNQ YVNFSTLTIE AIWFTQLRKE S

Best Arabidopsis Sequence Match ( AT1G23190.1 )
(BLAST)

001: MVFKVSTVST SPIDGQKPGT SGLRKKVKVF KQPNYLENFV QATFNALTAE KVKGATLVVS GDGRYYSKDA VQIIIKMAAA NGVRRVWVGK NTLLSTPAVS
101: AVIRERSGAD GSKATGAFIL TASHNPGGPT EDFGIKYNME NGGPAPESIT DKIYENTKTI KEYPIAQDLP NVDISAVGVT SFEGPEGKFD VEVFDPADDY
201: VKLMKSIFDF EAIRKLLSSP KFTFCYDALH GVAGAYAHRI FVEELGAQES ALLNCTPKED FGGGHPDPNL TYAKELVARM GLGKSDTGGE PPEFGAAADG
301: DADRNMILGK RFFVTPSDSV AIIAANAIGA IPYFSSGLKG VARSMPTSAA LDVVAKSLNL KFFEVPTGWK FFGNLMDAGM CSVCGEESFG TGSDHIREKD
401: GIWAVLAWMS ILAHKNKGNI DGNAKLVSVE DIVRQHWATY GRHYYTRYDY ENVDAGKAKE LMEHLVKLQS SIPEVNKIVK GIRSDVASVA SADEFEYKDP
501: VDGSISKHQG IRYLFEDGSR LVFRLSGTGS EGATIRLYIE QYEKDASKTG RESQEALSPL VDLALKLSKM EEFTGRSAPT VIT

Arabidopsis Description

PGM3Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.