CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90945
KRG92196
KRG92238	nucleus, nucleus
KRG95055	nucleus
KRG95056	nucleus
KRG99255	nucleus
KRG99448	nucleus, nucleus
KRG99786	nucleus, nucleus
KRH04308
KRH04631	nucleus, nucleus
KRH05060	nucleus, nucleus
KRH05109
KRH05614	nucleus
KRH05913
KRH08168
KRH15427	nucleus
KRH16010
KRH16044	nucleus, nucleus
KRH16410	nucleus
KRH17396
KRH17986	nucleus
KRH18721
KRH22479	nucleus, nucleus, nucleus
KRH25124	nucleus, nucleus, nucleus, nucleus, nucleus
KRH25470	nucleus, nucleus, nucleus
KRH26876	nucleus, nucleus, nucleus
KRH27542
KRH28363	nucleus, nucleus, nucleus
KRH28480	nucleus, nucleus
KRH28724
KRH30550	nucleus, nucleus, nucleus, nucleus, nucleus
KRH34589
KRH35827
KRH36433
KRH40974
KRH44391	nucleus, nucleus, nucleus
KRH44611
KRH44849
KRH45568	nucleus, nucleus
KRH45743	nucleus
KRH46746	nucleus, nucleus
KRH47293
KRH47513	nucleus, nucleus, nucleus
KRH48239
KRH48739
KRH48933
KRH50258	nucleus, nucleus
KRH50336
KRH51329	nucleus, nucleus
KRH51734
KRH52055	nucleus
KRH52056	nucleus
KRH52488
KRH52489
KRH52524	nucleus, nucleus
KRH53279	nucleus
KRH56054	nucleus, nucleus, nucleus
KRH57590
KRH57804	nucleus, nucleus
KRH57887
KRH59626
KRH60628	nucleus, nucleus
KRH61066
KRH61369	nucleus
KRH61371	nucleus
KRH61373	nucleus
KRH61375	nucleus
KRH61850	nucleus, nucleus
KRH63118
KRH63972
KRH64625	nucleus
KRH65148
KRH66354
KRH66713	nucleus
KRH66715	nucleus
KRH66718	nucleus
KRH66720	nucleus
KRH69476	nucleus
KRH69654	nucleus, nucleus
KRH69861
KRH70673
KRH71159	nucleus, nucleus
KRH74510	nucleus, nucleus
KRH74675	nucleus
KRH76738
KRH76992	nucleus, nucleus
KRH77118	nucleus, nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18040.1	KRH44391	AT1G15570.1	20407024
AT1G18040.1	KRH47513	AT1G15570.1	20407024
AT1G18040.1	KRH51329	AT1G20610.1	20407024
AT1G18040.1	KRH60628	AT1G20610.1	20407024
AT1G18040.1	KRH16410	AT1G44110.1	20407024
AT1G18040.1	KRH17986	AT1G44110.1	20407024
AT1G18040.1	KRH53279	AT1G44110.1	20407024
AT1G18040.1	KRH64625	AT1G44110.1	20407024
AT1G18040.1	KRH44391	AT1G80370.1	20407024
AT1G18040.1	KRH47513	AT1G80370.1	20407024
AT1G18040.1	KRH25124	AT2G27960.1	20407024
AT1G18040.1	KRH30550	AT2G27960.1	20407024
AT1G18040.1	KRH25124	AT2G27970.1	20407024
AT1G18040.1	KRH30550	AT2G27970.1	20407024
AT1G18040.1	KRG92238	AT2G32710.1	20407024
AT1G18040.1	KRG95055	AT3G11520.1	20407024
AT1G18040.1	KRG95056	AT3G11520.1	20407024
AT1G18040.1	KRH66713	AT3G11520.1	20407024
AT1G18040.1	KRH66715	AT3G11520.1	20407024
AT1G18040.1	KRH66718	AT3G11520.1	20407024
AT1G18040.1	KRH66720	AT3G11520.1	20407024
AT1G18040.1	KRH04631	AT3G19150.1	20407024
AT1G18040.1	KRH28480	AT3G19150.1	20407024
AT1G18040.1	KRH50258	AT3G19150.1	20407024
AT1G18040.1	KRH57804	AT3G19150.1	20407024
AT1G18040.1	KRH71159	AT3G19150.1	20407024
AT1G18040.1	KRH76992	AT3G19150.1	20407024
AT1G18040.1	KRG99786	AT3G24810.1	20407024
AT1G18040.1	KRH46746	AT3G24810.1	20407024
AT1G18040.1	KRH22479	AT4G03270.1	20407024
AT1G18040.1	KRH25470	AT4G03270.1	20407024
AT1G18040.1	KRH26876	AT4G03270.1	20407024
AT1G18040.1	KRH56054	AT4G03270.1	20407024
AT1G18040.1	KRH28363	AT4G37630.1	20407024
AT1G18040.1	KRH77118	AT4G37630.1	20407024
AT1G18040.1	KRH05060	AT5G11300.1	20407024
AT1G18040.1	KRH16044	AT5G11300.1	20407024
AT1G18040.1	KRH52524	AT5G11300.1	20407024
AT1G18040.1	KRH61850	AT5G11300.1	20407024
AT1G18040.1	KRH05614	AT5G43080.1	20407024
AT1G18040.1	KRH15427	AT5G43080.1	20407024
AT1G18040.1	KRH52055	AT5G43080.1	20407024
AT1G18040.1	KRH52056	AT5G43080.1	20407024
AT1G18040.1	KRH61369	AT5G43080.1	20407024
AT1G18040.1	KRH61371	AT5G43080.1	20407024
AT1G18040.1	KRH61373	AT5G43080.1	20407024
AT1G18040.1	KRH61375	AT5G43080.1	20407024
AT1G66750.1	KRH44391	AT1G15570.1	20407024
AT1G66750.1	KRH47513	AT1G15570.1	20407024
AT1G66750.1	KRH44849	AT1G16330.1	20407024
AT1G66750.1	KRH04308	AT1G32380.1	20706207
AT1G66750.1	KRH57590	AT1G32380.1	20706207
AT1G66750.1	KRH50336	AT1G49760.1	20706207
AT1G66750.1	KRH70673	AT1G49760.1	20706207
AT1G66750.1	KRG92196	AT1G55750.1	20706207
AT1G66750.1	KRH34589	AT1G55750.1	20706207
AT1G66750.1	KRH27542	AT1G66340.1	20706207
AT1G66750.1	KRH36433	AT1G66340.1	20706207
AT1G66750.1	KRH25124	AT2G27960.1	20407024
AT1G66750.1	KRH30550	AT2G27960.1	20407024
AT1G66750.1	KRH25124	AT2G27970.1	20407024
AT1G66750.1	KRH30550	AT2G27970.1	20407024
AT1G66750.1	KRG92238	AT2G32710.1	20407024
AT1G66750.1	KRH48933	AT2G44530.1	20706207
AT1G66750.1	KRH66354	AT2G44530.1	20706207
AT1G66750.1	KRG95055	AT3G11520.1	20407024
AT1G66750.1	KRG95056	AT3G11520.1	20407024
AT1G66750.1	KRH66713	AT3G11520.1	20407024
AT1G66750.1	KRH66715	AT3G11520.1	20407024
AT1G66750.1	KRH66718	AT3G11520.1	20407024
AT1G66750.1	KRH66720	AT3G11520.1	20407024
AT1G66750.1	KRH04631	AT3G19150.1	20407024
AT1G66750.1	KRH28480	AT3G19150.1	20407024
AT1G66750.1	KRH50258	AT3G19150.1	20407024
AT1G66750.1	KRH57804	AT3G19150.1	20407024
AT1G66750.1	KRH71159	AT3G19150.1	20407024
AT1G66750.1	KRH76992	AT3G19150.1	20407024
AT1G66750.1	KRH44611	AT3G21140.1	20706207
AT1G66750.1	KRH47293	AT3G21140.1	20706207
AT1G66750.1	KRG99786	AT3G24810.1	20407024
AT1G66750.1	KRH46746	AT3G24810.1	20407024
AT1G66750.1	KRH22479	AT4G03270.1	20407024
AT1G66750.1	KRH25470	AT4G03270.1	20407024
AT1G66750.1	KRH26876	AT4G03270.1	20407024
AT1G66750.1	KRH56054	AT4G03270.1	20407024
AT1G66750.1	KRH63118	AT4G30825.1	20706207
AT1G66750.1	KRH08168	AT4G36490.1	20706207
AT1G66750.1	KRH28724	AT4G36490.1	20706207
AT1G66750.1	KRH69861	AT4G36490.1	20706207
AT1G66750.1	KRH76738	AT4G36490.1	20706207
AT1G66750.1	KRH28363	AT4G37630.1	20407024
AT1G66750.1	KRH77118	AT4G37630.1	20407024
AT1G66750.1	KRH05913	AT4G38900.1	20706207
AT1G66750.1	KRH17396	AT4G38900.1	20706207
AT1G66750.1	KRH51734	AT4G38900.1	20706207
AT1G66750.1	KRH61066	AT4G38900.1	20706207
AT1G66750.1	KRG90945	AT5G08670.1	17426018
AT1G66750.1	KRH18721	AT5G08670.1	17426018
AT1G66750.1	KRH35827	AT5G08670.1	17426018
AT1G66750.1	KRH48739	AT5G08670.1	17426018
AT1G66750.1	KRG90945	AT5G08690.1	17426018
AT1G66750.1	KRH18721	AT5G08690.1	17426018
AT1G66750.1	KRH35827	AT5G08690.1	17426018
AT1G66750.1	KRH48739	AT5G08690.1	17426018
AT1G66750.1	KRG99448	AT5G10440.1	20407024
AT1G66750.1	KRH45568	AT5G10440.1	20407024
AT1G66750.1	KRH69654	AT5G10440.1	20407024
AT1G66750.1	KRH74510	AT5G10440.1	20407024
AT1G66750.1	KRH05060	AT5G11300.1	20407024
AT1G66750.1	KRH16044	AT5G11300.1	20407024
AT1G66750.1	KRH52524	AT5G11300.1	20407024
AT1G66750.1	KRH61850	AT5G11300.1	20407024
AT1G66750.1	KRH05109	AT5G25460.1	20706207
AT1G66750.1	KRH16010	AT5G25460.1	20706207
AT1G66750.1	KRH52488	AT5G25460.1	20706207
AT1G66750.1	KRH52489	AT5G25460.1	20706207
AT1G66750.1	KRH40974	AT5G63610.1	20407024
AT1G66750.1	KRH57887	AT5G63610.1	20407024
AT1G66750.1	KRH59626	AT5G63610.1	20407024
AT1G66750.1	KRH63972	AT5G63610.1	20407024
AT1G73690.1	KRH44391	AT1G15570.1	20407024
AT1G73690.1	KRH47513	AT1G15570.1	20407024
AT1G73690.1	KRH44849	AT1G16330.1	20407024
AT1G73690.1	KRH51329	AT1G20610.1	20407024
AT1G73690.1	KRH60628	AT1G20610.1	20407024
AT1G73690.1	KRG99255	AT1G70210.1	20407024
AT1G73690.1	KRH45743	AT1G70210.1	20407024
AT1G73690.1	KRH69476	AT1G70210.1	20407024
AT1G73690.1	KRH74675	AT1G70210.1	20407024
AT1G73690.1	KRH25124	AT2G27970.1	20407024
AT1G73690.1	KRH30550	AT2G27970.1	20407024
AT1G73690.1	KRG92238	AT2G32710.1	20407024
AT1G73690.1	KRH48239	AT3G61140.1	20706207
AT1G73690.1	KRH65148	AT3G61140.1	20706207
AT1G73690.1	KRH22479	AT4G03270.1	20407024
AT1G73690.1	KRH25470	AT4G03270.1	20407024
AT1G73690.1	KRH26876	AT4G03270.1	20407024
AT1G73690.1	KRH56054	AT4G03270.1	20407024
AT1G73690.1	KRH28363	AT4G37630.1	20407024
AT1G73690.1	KRH77118	AT4G37630.1	20407024
AT1G73690.1	KRG99448	AT5G10440.1	20407024
AT1G73690.1	KRH45568	AT5G10440.1	20407024
AT1G73690.1	KRH69654	AT5G10440.1	20407024
AT1G73690.1	KRH74510	AT5G10440.1	20407024
AT1G73690.1	KRH05060	AT5G11300.1	20407024
AT1G73690.1	KRH16044	AT5G11300.1	20407024
AT1G73690.1	KRH52524	AT5G11300.1	20407024
AT1G73690.1	KRH61850	AT5G11300.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60482	Soybean	cytosol	95.32	84.6
KRH39114	Soybean	nucleus	88.71	78.35
KRH48600	Soybean	cytosol	85.67	77.56
CDY36228	Canola	cytosol	71.63	74.93
CDX96131	Canola	cytosol	71.63	74.93
AT1G66750.1	Thale cress	cytosol	71.35	74.43
VIT_17s0000g02960.t01	Wine grape	cytosol	85.12	73.22
Bra031013.1-P	Field mustard	cytosol	75.21	72.41
CDY21722	Canola	cytosol	75.48	70.44
AT1G18040.1	Thale cress	cytosol	75.76	70.33
Solyc08g081280.2.1	Tomato	cytosol, nucleus	80.99	70.17
PGSC0003DMT400032131	Potato	cytosol	80.72	69.93
CDX81858	Canola	cytosol	74.93	69.92
Bra016572.1-P	Field mustard	cytosol	75.21	69.47
CDX96739	Canola	cytosol	75.21	69.47
AT1G73690.1	Thale cress	cytosol	75.48	68.84
CDX83876	Canola	cytosol	74.66	68.61
CDX73001	Canola	cytosol	73.83	67.51
Bra015974.1-P	Field mustard	cytosol	73.55	67.25
CDY60132	Canola	cytosol	73.28	67.0
TraesCS1D01G245300.1	Wheat	cytosol	77.69	66.51
TraesCS1B01G256600.1	Wheat	cytosol	77.69	66.51
TraesCS1A01G245600.1	Wheat	cytosol	77.69	66.51
HORVU1Hr1G062980.2	Barley	cytosol	77.14	65.88
EES18176	Sorghum	cytosol	76.31	64.72
Zm00001d010476_P001	Maize	cytosol	76.03	64.49
GSMUA_Achr3P09020_001	Banana	cytosol	81.54	62.71
Zm00001d038109_P002	Maize	cytosol	74.1	62.56
GSMUA_Achr9P17590_001	Banana	cytosol	81.54	59.08
KRH36887	Soybean	cytosol, nucleus	38.84	47.96
KRH42252	Soybean	cytosol	38.84	47.96
KRH11866	Soybean	cytosol, nucleus	38.57	47.62
KRH58370	Soybean	cytosol	39.12	47.33
KRH47306	Soybean	cytosol, nucleus, plasma membrane	35.81	41.4
KRH06014	Soybean	cytosol	33.88	39.17
KRH48128	Soybean	cytosol	33.88	39.05
KRH37522	Soybean	cytosol	33.88	38.8
KRH17547	Soybean	cytosol	33.88	36.5
KRH59626	Soybean	cytosol	31.13	36.45
KRH26046	Soybean	cytosol	28.93	35.59
KRH13011	Soybean	cytosol	30.85	34.04
KRH44859	Soybean	cytosol	30.58	33.23
KRH57887	Soybean	cytosol	21.21	32.63
KRH57208	Soybean	cytosol	19.01	32.55
KRH63972	Soybean	cytosol	39.39	30.95
KRH40974	Soybean	cytosol, nucleus	37.74	29.72
KRH76377	Soybean	cytosol	31.96	25.78
KRH39665	Soybean	cytosol	31.68	25.27
KRH66138	Soybean	cytosol	30.03	25.06
KRH07697	Soybean	nucleus	30.85	24.83
KRH07433	Soybean	cytosol	29.75	24.83
KRH07201	Soybean	cytosol	26.45	23.08
KRH03917	Soybean	nucleus	34.16	21.68
KRH57202	Soybean	nucleus	33.88	21.35
KRH42643	Soybean	nucleus	36.91	17.99
KRH58745	Soybean	nucleus	36.64	17.83
KRH31446	Soybean	nucleus	35.81	17.52
KRG97452	Soybean	nucleus	28.1	16.29

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.4	MapMan:14.6.3.1.3	MapMan:15.3.5.6.2.2	MapMan:18.4.3.1.4	Gene3D:3.30.200.20
EMBL:ACUP02004781	EnsemblPlantsGene:GLYMA_08G050900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0004693	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0006139	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0045944	GO:GO:0051726	GO:GO:0070985
UniProt:I1KQG7	InterPro:IPR000719	EnsemblPlants:KRH41782	ProteinID:KRH41782	ProteinID:KRH41782.1	InterPro:Kinase-like_dom_sf
PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24056
PANTHER:PTHR24056:SF242	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00023C59B5	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3966033..3969472

Molecular Weight (calculated)

41113.5 Da

IEP (calculated)

9.426

GRAVY (calculated)

-0.393

Length

363 amino acids

Sequence
(BLAST)

001: MSDMDPSKKV ADRYLKREVL GEGTYGVVYK AIDTHTGQTV AIKKIRLGKQ KEGVNFTALR EIKLLKELKD PNIVELIDAF PHKGNLHLVF EFMETDLEAV
101: IRDRNIFLSP SDTKSYLQMT LKGLAYCHKK WVLHRDMKPN NLLIGSNGQL KLADFGLARM FGSPDRRFTH QVFARWYRAP ELLFGAKQYG PGVDVWAAGC
201: IFAELLLRRP FLQGTSDIDQ LGKIFSAFGT PTASQWPDMV YLPDYVEYQY VPAPPLRSLF PMVTDDALDL LSKMFTYDPK ARISVQQALE HRYFSSAPLP
301: SDPDKLPRPA PKRESRTSDF NLQEGPTVLS PPRKSRRVMP GRDGFEGSSL QADKVDASFG DFN

Best Arabidopsis Sequence Match ( AT1G73690.1 )
(BLAST)

001: MEQPKKVADR YLKREVLGQG TYGVVFKATD TKNGETVAIK KIRLGKEKEG VNVTALREIK LLKELKHPHI IELIDAFPHK ENLHIVFEFM ETDLEAVIRD
101: RNLYLSPGDV KSYLQMILKG LEYCHGKWVL HRDMKPNNLL IGPNGQLKLA DFGLARIFGS PGRKFTHQVF ARWYRAPELL FGAKQYDGAV DVWAAGCIFA
201: ELLLRRPFLQ GNSDIDQLSK IFAAFGTPKA DQWPDMICLP DYVEYQFVPA PSLRSLLPTV SEDALDLLSK MFTYDPKSRI SIQQALKHRY FTSAPSPTDP
301: LKLPRPVSKQ DAKSSDSKLE AIKVLSPAHK FRRVMPDRGK SGNGFKDQSV DVMRQASHDG QAPMSLDFTI LAERPPNRPT ITSADRSHLK RKLDLEFL

Arabidopsis Description

CDKD-1Cyclin-dependent kinase D-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.