CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	KRG98502	AT4G26630.1	25387881
AT4G36490.1	KRG98507	AT4G26630.1	25387881
AT4G36490.1	KRH46360	AT4G26630.1	25387881
AT4G36490.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08168	Soybean	plastid	94.59	94.59
KRH76738	Soybean	plastid	67.21	77.55
KRH28724	Soybean	plastid	67.39	77.43
AT4G36490.1	Thale cress	plastid	64.5	65.93
AT2G18180.1	Thale cress	plastid	63.24	62.9
KRH24439	Soybean	plastid	35.86	60.67
PGSC0003DMT400043532	Potato	cytosol	59.1	58.89
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	60.72	58.71
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	60.36	58.36
Solyc10g053900.1.1	Tomato	cytosol, plastid	59.46	58.0
KRH29420	Soybean	cytosol, nucleus, plastid	58.74	57.9
KRH51503	Soybean	cytosol	59.46	57.59
Solyc11g040280.1.1	Tomato	cytosol	61.98	57.53
KRH60806	Soybean	cytosol	59.28	57.52
PGSC0003DMT400021690	Potato	nucleus	62.16	57.12
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	54.23	56.16
GSMUA_Achr6P03210_001	Banana	cytosol	59.28	55.39
GSMUA_Achr5P23630_001	Banana	cytosol	60.0	55.32
CDX69225	Canola	mitochondrion	59.28	54.2
OQU84321	Sorghum	cytosol	53.87	53.01
Os10t0122600-01	Rice	cytosol, nucleus, plastid	55.5	51.51
Os02t0440900-00	Rice	cytosol	54.77	50.84
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	60.18	50.61
HORVU2Hr1G082530.1	Barley	cytosol	52.79	50.6
TraesCS6B01G125700.1	Wheat	plastid	56.04	50.57
TraesCS6A01G097200.1	Wheat	plastid	55.5	50.24
TraesCS6D01G085200.1	Wheat	plastid	55.5	50.08
TraesCS2D01G335700.2	Wheat	nucleus	53.15	49.92
TraesCS2B01G354800.2	Wheat	nucleus	52.97	49.75
TraesCS2A01G327200.2	Wheat	nucleus	52.97	49.75
HORVU6Hr1G017580.5	Barley	plastid	56.22	49.68
Os02t0133200-01	Rice	plasma membrane	55.86	49.05
KRH60804	Soybean	cytosol	54.95	48.88
Zm00001d016601_P006	Maize	cytosol	52.97	48.59
KRH29416	Soybean	cytosol	54.95	48.49
KRH51809	Soybean	nucleus	51.53	48.31
KRH24438	Soybean	cytosol	54.41	48.01
OQU85018	Sorghum	nucleus	52.97	47.96
KRH61132	Soybean	cytosol	50.81	47.64
Zm00001d015175_P002	Maize	plastid	54.95	47.29
KRH05860	Soybean	cytosol	53.15	47.2
KRH15161	Soybean	cytosol	52.97	46.67
KRH51499	Soybean	cytosol	53.51	46.33
KRG99756	Soybean	cytosol	31.71	45.71
KRH77370	Soybean	cytosol	32.79	39.31
KRG99773	Soybean	cytosol, nucleus, plastid	41.44	38.72
KRH28067	Soybean	cytosol	32.07	38.7
KRH45371	Soybean	cytosol	30.45	38.41
KRH46724	Soybean	cytosol, nucleus, plastid	40.72	38.05
KRH62508	Soybean	cytosol	40.36	36.13
KRH56402	Soybean	cytosol	39.64	35.48
KRH07662	Soybean	cytosol	38.92	34.9
KRG99659	Soybean	cytosol, nucleus, plastid	4.14	30.26
KRG99658	Soybean	cytosol, nucleus, plastid	4.14	30.26
KRH36621	Soybean	cytosol	15.32	25.84
KRH11617	Soybean	cytosol	15.14	25.53
KRH14208	Soybean	cytosol	14.77	25.47
KRH65859	Soybean	cytosol	6.49	25.17
KRH01941	Soybean	cytosol	14.59	25.0
KRH51210	Soybean	cytosol	14.59	24.92
KRH75081	Soybean	extracellular, mitochondrion	5.41	24.39
KRH46410	Soybean	cytosol	14.77	24.26
KRH73923	Soybean	cytosol	9.01	23.81
KRG82898	Soybean	cytosol	7.75	22.87
KRH46406	Soybean	cytosol	10.63	22.78
KRG98457	Soybean	cytosol	15.5	20.98
KRH46400	Soybean	cytosol	9.91	20.45
KRG82897	Soybean	cytosol	3.42	17.43
KRG99755	Soybean	endoplasmic reticulum	5.77	16.33

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:100791772	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02000734	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G053200	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001251	InterPro:IPR036865	UniProt:K7K6K2	EnsemblPlants:KRH69861
ProteinID:KRH69861	ProteinID:KRH69861.1	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191
PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087
TMHMM:TMhelix	UniParc:UPI00023BF07C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4863464..4869036

Molecular Weight (calculated)

63537.3 Da

IEP (calculated)

6.993

GRAVY (calculated)

-0.590

Length

555 amino acids

Sequence
(BLAST)

001: MSGPLSPKTS LEKSDRVGSL KKMLRNSLTR SRRRSSSKVM SVEIEDIRDA EESKAVDEFR QALVLDELLP EKHDDYHMLL RFLKARKFEL EKSKQMWSDM
101: LQWRKEFGAD TISEDFEFKE LEEVLQYYPH GHHGVDKDGR PVYIERIGQV DATKLMQVTT MDRYIKYHVK EFERTFDVKF AACSISAKKH IDQSTTILDV
201: QGVGLKSFNK HARELITRLQ KIDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTS KIHVLGNKYQ SKLLEIIDES ELPEFLGGTC TCADQGGCMH
301: SDKGPWKDAD IMKMVQNGDH KCSRKCEVPV MEEKTASEEH ETSKLEANLT AQLSSVFAGV PASKAYNYED FVPEADKTAW NKKMDENEKF ALSKVGAVDA
401: YAMVDSFNIH EKMNSQIFTG VMAFVMGIVT MVRMTKNMPK KLTDANFYSN FGSEYKGQAT NSEEMTTMPN ISAKEFMTVM KRMAELEDKM VKMNNQTICM
501: PPEKEEMLNA AITRADALEQ ELLATKKALE DSLSKQEELS AYIEKKKKKK KLFAW

Best Arabidopsis Sequence Match ( AT4G36490.1 )
(BLAST)

001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW

Arabidopsis Description

SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.