Factsheet for Solyc10g053900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT4G36490.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043532	Potato	cytosol	94.38	96.41
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	73.64	73.0
Solyc11g040280.1.1	Tomato	cytosol	74.69	71.07
KRH76738	Soybean	plastid	53.43	63.2
KRH28724	Soybean	plastid	53.43	62.94
KRH24439	Soybean	plastid	35.85	62.2
CDY15887	Canola	cytosol	58.17	60.29
CDX99586	Canola	cytosol	58.17	60.18
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	57.65	59.85
KRH69861	Soybean	plastid	58.0	59.46
KRH08168	Soybean	plastid	58.0	59.46
KRH60806	Soybean	cytosol	59.58	59.27
KRH51503	Soybean	cytosol	59.58	59.16
AT4G36490.1	Thale cress	plastid	56.41	59.12
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	50.44	58.81
KRH29420	Soybean	cytosol, nucleus, plastid	58.17	58.79
CDX75444	Canola	cytosol	54.66	58.24
CDX69071	Canola	cytosol	54.48	58.05
Bra034638.1-P	Field mustard	cytosol	55.01	57.54
AT2G18180.1	Thale cress	plastid	56.24	57.35
AT4G34580.2	Thale cress	cytosol	55.71	57.22
CDY12126	Canola	cytosol	52.9	56.26
AT4G39180.1	Thale cress	cytosol	54.66	56.14
VIT_03s0038g04480.t01	Wine grape	cytosol	61.16	56.13
CDX90317	Canola	cytosol	52.72	55.87
Bra010699.1-P	Field mustard	cytosol	52.72	55.87
CDY45318	Canola	cytosol, plastid	49.03	55.8
CDX89709	Canola	cytosol, mitochondrion	44.46	55.6
GSMUA_Achr6P03210_001	Banana	cytosol	57.82	55.39
CDY17469	Canola	cytosol	55.36	55.17
Bra011544.1-P	Field mustard	cytosol, plastid	47.98	55.15
GSMUA_Achr5P23630_001	Banana	cytosol	58.35	55.15
Solyc04g080690.1.1	Tomato	cytosol	27.24	54.39
Bra017663.1-P	Field mustard	cytosol, plastid	43.23	53.95
CDX76291	Canola	cytosol	55.54	53.38
HORVU2Hr1G082530.1	Barley	cytosol	53.25	52.33
Os10t0122600-01	Rice	cytosol, nucleus, plastid	54.83	52.17
TraesCS2A01G327200.2	Wheat	nucleus	53.95	51.95
TraesCS2D01G335700.2	Wheat	nucleus	53.78	51.78
AT2G16380.1	Thale cress	cytosol	49.74	51.74
TraesCS2B01G354800.2	Wheat	nucleus	53.43	51.44
OQU84321	Sorghum	cytosol	50.97	51.42
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	59.4	51.21
Os02t0440900-00	Rice	cytosol	53.78	51.17
Zm00001d016601_P006	Maize	cytosol	53.95	50.74
Solyc10g053970.1.1	Tomato	cytosol	54.66	49.92
Solyc01g109870.2.1	Tomato	cytosol	54.66	49.76
OQU85018	Sorghum	nucleus	53.6	49.76
CDX69225	Canola	mitochondrion	52.2	48.93
TraesCS6B01G125700.1	Wheat	plastid	51.49	47.64
TraesCS6A01G097200.1	Wheat	plastid	51.32	47.63
TraesCS6D01G085200.1	Wheat	plastid	51.14	47.32
Os02t0133200-01	Rice	plasma membrane	51.85	46.68
HORVU6Hr1G017580.5	Barley	plastid	51.14	46.34
Zm00001d015175_P002	Maize	plastid	51.32	45.27
Solyc09g060090.2.1	Tomato	cytosol	41.48	39.8
Solyc07g066090.2.1	Tomato	nucleus	39.37	36.13
Solyc10g005740.1.1	Tomato	nucleus	38.84	35.76
Solyc08g078680.2.1	Tomato	cytosol	28.82	34.17
Solyc07g065700.2.1	Tomato	cytosol	7.91	24.46
Solyc11g012790.1.1	Tomato	cytosol	14.06	23.67
CDY02262	Canola	cytosol, plastid	50.26	19.85
Bra013077.1-P	Field mustard	cytosol, plastid	50.26	19.6

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	UniProt:K4D0Y8	PFAM:PF00650
PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516
SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:Solyc10g053900.1	EnsemblPlants:Solyc10g053900.1.1	UniParc:UPI000276A884

Description

No Description!

Coordinates

chr10:-:54201393..54206133

Molecular Weight (calculated)

65504.6 Da

IEP (calculated)

7.899

GRAVY (calculated)

-0.573

Length

569 amino acids

Sequence
(BLAST)

001: MSYLFFFATA TIMSGNMSGP LDQPFRSSLE KIDMENHEHE RKTRLGSLKK KAVNASTKFR HSFTKKGRRN SRVMSVIFED EHDAEEIKAV DAFRQALILD
101: ELLPGKHDDY HKLLRFLKAR KFDIDKSKQM WSDMIKWRSE FGADTIMEDF EFKEKEEVLK YYPQGHHGVD KEGRPVYIER IGQVDSVKLL QVTTMDRYLK
201: YHVQEFERTL NDKMPACSIA SKRHIDTSTT ILDVQGVGLK NFNKSARELI QCLQNIDGNN YPESLCRMYI INAGSGFRLL WNSVKSFLDP KTTAKIHVLS
301: NKYQSKLLEV IDASELPEFL GGTCTCADKG GCMLSDKGPW NDPEIMKMVH NGEHKCSNRN FISTIDEKTI SEDANIYVAH TQLSPLHEEA DMNKNYSRAY
401: DPEDYMPIVD KAVDVTWKKA NGRDFFPIHD ASKSPEGFRN HLFTGVMTLV MGIVTLVRMT RNMPRKLADA TLQAHSYQLS DPTISSSEYF SMIKRMEELE
501: EKAITLTNKP ASLPPEKEEL LNNAMKRIDT LEQELSATHK SLELALTRQA ELLEYIEKKR RKKKFLGIF

Best Arabidopsis Sequence Match ( AT2G21540.6 )
(BLAST)

001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF

Arabidopsis Description

SFH3Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.