Factsheet for Solyc01g109860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT4G36490.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	98.43	98.43
Solyc10g053900.1.1	Tomato	cytosol, plastid	73.0	73.64
Solyc11g040280.1.1	Tomato	cytosol	72.65	69.73
KRH76738	Soybean	plastid	54.7	65.28
KRH28724	Soybean	plastid	54.36	64.6
KRH24439	Soybean	plastid	36.06	63.11
KRH29420	Soybean	cytosol, nucleus, plastid	61.5	62.7
AT4G36490.1	Thale cress	plastid	58.54	61.88
KRH60806	Soybean	cytosol	60.28	60.49
KRH69861	Soybean	plastid	58.36	60.36
KRH08168	Soybean	plastid	58.36	60.36
KRH51503	Soybean	cytosol	60.1	60.21
CDY15887	Canola	cytosol	57.49	60.11
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	57.32	60.04
CDX99586	Canola	cytosol	57.49	60.0
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	50.0	58.81
AT2G18180.1	Thale cress	plastid	56.62	58.24
CDY12126	Canola	cytosol	54.01	57.94
CDX75444	Canola	cytosol	53.83	57.87
AT4G34580.2	Thale cress	cytosol	55.75	57.76
CDX69071	Canola	cytosol	53.48	57.49
VIT_03s0038g04480.t01	Wine grape	cytosol	62.02	57.42
Bra010699.1-P	Field mustard	cytosol	53.66	57.36
Bra034638.1-P	Field mustard	cytosol	54.36	57.35
CDX90317	Canola	cytosol	53.48	57.17
CDX89709	Canola	cytosol, mitochondrion	44.6	56.26
AT4G39180.1	Thale cress	cytosol	54.01	55.96
GSMUA_Achr5P23630_001	Banana	cytosol	58.19	55.48
Solyc04g080690.1.1	Tomato	cytosol	27.53	55.44
Bra011544.1-P	Field mustard	cytosol, plastid	47.74	55.35
GSMUA_Achr6P03210_001	Banana	cytosol	56.97	55.05
CDY17469	Canola	cytosol	54.7	54.99
CDY45318	Canola	cytosol, plastid	47.56	54.6
AT2G16380.1	Thale cress	cytosol	51.39	53.93
CDX76291	Canola	cytosol	54.88	53.21
Bra017663.1-P	Field mustard	cytosol, plastid	42.16	53.07
Os10t0122600-01	Rice	cytosol, nucleus, plastid	54.36	52.17
OQU84321	Sorghum	cytosol	50.87	51.77
Os02t0440900-00	Rice	cytosol	53.66	51.51
TraesCS2B01G354800.2	Wheat	nucleus	52.96	51.44
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	59.06	51.36
Solyc01g109870.2.1	Tomato	cytosol	55.92	51.36
HORVU2Hr1G082530.1	Barley	cytosol	51.74	51.3
TraesCS2D01G335700.2	Wheat	nucleus	52.79	51.27
TraesCS2A01G327200.2	Wheat	nucleus	52.79	51.27
CDX69225	Canola	mitochondrion	54.01	51.07
Solyc10g053970.1.1	Tomato	cytosol	55.23	50.88
OQU85018	Sorghum	nucleus	53.66	50.24
Zm00001d016601_P006	Maize	cytosol	52.79	50.08
Os02t0133200-01	Rice	plasma membrane	52.26	47.47
TraesCS6B01G125700.1	Wheat	plastid	50.7	47.32
TraesCS6A01G097200.1	Wheat	plastid	50.52	47.31
TraesCS6D01G085200.1	Wheat	plastid	50.35	46.99
HORVU6Hr1G017580.5	Barley	plastid	50.87	46.5
Zm00001d015175_P002	Maize	plastid	51.74	46.05
Solyc09g060090.2.1	Tomato	cytosol	40.59	39.29
Solyc07g066090.2.1	Tomato	nucleus	39.2	36.29
Solyc10g005740.1.1	Tomato	nucleus	38.33	35.6
Solyc08g078680.2.1	Tomato	cytosol	27.87	33.33
Solyc07g065700.2.1	Tomato	cytosol	8.19	25.54
Solyc11g012790.1.1	Tomato	cytosol	14.11	23.96
CDY02262	Canola	cytosol, plastid	50.35	20.06
Bra013077.1-P	Field mustard	cytosol, plastid	50.35	19.81

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	UniProt:K4B3J9	PFAM:PF00650
PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516
SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:Solyc01g109860.2	EnsemblPlants:Solyc01g109860.2.1	UniParc:UPI0002768BAC
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:96698812..96702365

Molecular Weight (calculated)

65487.0 Da

IEP (calculated)

8.882

GRAVY (calculated)

-0.567

Length

574 amino acids

Sequence
(BLAST)

001: MSEYKSGPLE RPVRPSLEKF DMDAEDERKT RLGSIKKAAI NASTKFRNSL TKRGRRNSRV MSVVVLEDEH DAEELKAVDA LRQALILEEL LPAKHDDYHL
101: MLRFLKARKF DIEKTKQMWA DMLQWRREFG ADTITEDFDF KEKEEVLKYY PQGHHGVDKE GRPVYIERIG QVDSVKLLQA TTMDRYLKYH VQEFERTIND
201: KMPACSLAAK RHIDTSTTIL DVQGVGLKNF NKSARDLIQR LQAIDGNNYP ESLCRMYIIN AGSGFRLLWN SVKSFLDPKT TQKIHVLGNK YHSKLLEIID
301: ASELPEFLGG TCTCADKGGC MVSDKGPWND PEIMRMVRNG EHKCSHKFVI SMDEKTIPED DNANTKKSTS FRKETDSSKV QRDNGQLSPV REEFDIPIVD
401: KAVYATWPKQ VKAGPLANSK DFFPVHDACK SSEGFGNPVF SGVMTLVMGI VTLVRMTKNM PRKLTDATLL AGSLYSADMI KEQQTHGHVI STKDYISMMK
501: RMEELEDKVI TLSQKPSSMP PEKENMLNAA INRVGTLEEE LLATKKALDE ALVRQQELLS VLEKKKKKKK FFVF

Best Arabidopsis Sequence Match ( AT4G36490.1 )
(BLAST)

001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW

Arabidopsis Description

SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.