Factsheet for Zm00001d016601_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT4G36490.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85018	Sorghum	nucleus	91.57	90.38
Os10t0122600-01	Rice	cytosol, nucleus, plastid	79.67	80.6
Os02t0440900-00	Rice	cytosol	78.02	78.93
TraesCS2A01G327200.2	Wheat	nucleus	76.69	78.51
TraesCS2D01G335700.2	Wheat	nucleus	76.36	78.17
TraesCS2B01G354800.2	Wheat	nucleus	76.03	77.83
HORVU2Hr1G082530.1	Barley	cytosol	74.38	77.72
Zm00001d039981_P001	Maize	cytosol	13.88	68.29
GSMUA_Achr5P23630_001	Banana	cytosol	61.98	62.29
GSMUA_Achr6P03210_001	Banana	cytosol	60.5	61.62
Zm00001d031251_P001	Maize	cytosol, mitochondrion	12.89	60.47
Zm00001d012531_P001	Maize	mitochondrion	13.06	60.31
KRH28724	Soybean	plastid	45.95	57.56
KRH76738	Soybean	plastid	45.62	57.38
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	62.48	57.27
CDX75444	Canola	cytosol	49.59	56.18
CDX69071	Canola	cytosol	49.42	55.99
KRH24439	Soybean	plastid	30.25	55.79
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	50.41	55.66
AT4G36490.1	Thale cress	plastid	49.92	55.62
CDY15887	Canola	cytosol	50.41	55.56
CDX99586	Canola	cytosol	50.25	55.27
PGSC0003DMT400043532	Potato	cytosol	50.74	55.12
Bra034638.1-P	Field mustard	cytosol	49.42	54.96
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	44.3	54.92
CDX89709	Canola	cytosol, mitochondrion	40.99	54.51
Bra011544.1-P	Field mustard	cytosol, plastid	44.46	54.34
AT4G34580.2	Thale cress	cytosol	49.59	54.15
CDY12126	Canola	cytosol	47.77	54.02
Solyc10g053900.1.1	Tomato	cytosol, plastid	50.74	53.95
CDY45318	Canola	cytosol, plastid	44.46	53.8
KRH51503	Soybean	cytosol	50.91	53.75
CDX90317	Canola	cytosol	47.44	53.45
Bra010699.1-P	Field mustard	cytosol	47.44	53.45
KRH08168	Soybean	plastid	48.93	53.33
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	50.41	53.14
Bra017663.1-P	Field mustard	cytosol, plastid	40.0	53.07
KRH69861	Soybean	plastid	48.59	52.97
CDY17469	Canola	cytosol	49.92	52.89
AT4G39180.1	Thale cress	cytosol	48.43	52.89
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	50.08	52.79
AT2G18180.1	Thale cress	plastid	48.26	52.33
KRH60806	Soybean	cytosol	49.42	52.27
KRH29420	Soybean	cytosol, nucleus, plastid	48.59	52.22
Solyc11g040280.1.1	Tomato	cytosol	51.41	52.01
PGSC0003DMT400021690	Potato	nucleus	51.9	51.99
Zm00001d043774_P001	Maize	cytosol	7.27	51.76
CDX76291	Canola	cytosol	49.92	51.01
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	45.12	50.93
Zm00001d015175_P002	Maize	plastid	54.21	50.85
AT2G16380.1	Thale cress	cytosol	45.12	49.91
VIT_03s0038g04480.t01	Wine grape	cytosol	51.07	49.84
Zm00001d015174_P005	Maize	cytosol	53.06	49.08
Zm00001d053994_P008	Maize	cytosol, mitochondrion	52.23	47.45
Zm00001d009439_P004	Maize	cytosol	46.28	45.31
Zm00001d038880_P001	Maize	cytosol	46.28	45.31
CDX69225	Canola	mitochondrion	44.96	44.81
Zm00001d019582_P001	Maize	cytosol	23.14	43.75
Zm00001d045670_P001	Maize	cytosol	13.55	43.62
Zm00001d043733_P002	Maize	mitochondrion	39.5	43.53
Zm00001d035770_P002	Maize	cytosol, endoplasmic reticulum	21.32	43.43
Zm00001d008240_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	14.21	43.43
Zm00001d011663_P003	Maize	cytosol	42.64	42.02
Zm00001d005995_P003	Maize	nucleus	39.67	40.07
Zm00001d017876_P018	Maize	cytosol	40.33	39.55
Zm00001d014589_P001	Maize	cytosol	6.28	39.18
Zm00001d051674_P037	Maize	cytosol	39.5	39.05
Zm00001d045718_P001	Maize	cytosol	15.21	36.36
Zm00001d031316_P020	Maize	cytosol	38.68	36.28
Zm00001d037983_P001	Maize	cytosol	13.72	35.17
Zm00001d050131_P002	Maize	cytosol	35.21	33.33
Zm00001d052840_P016	Maize	plastid	39.17	32.69
Zm00001d010393_P001	Maize	plastid	18.02	29.95
Zm00001d015785_P001	Maize	extracellular	13.22	24.46
Zm00001d053333_P001	Maize	cytosol	4.79	23.77
Zm00001d047488_P001	Maize	nucleus	6.12	23.12
Zm00001d015625_P001	Maize	cytosol	4.96	23.08
Zm00001d024390_P001	Maize	cytosol	4.63	21.88
Zm00001d046538_P003	Maize	cytosol	13.06	20.1
CDY02262	Canola	cytosol, plastid	46.61	19.57
Zm00001d005118_P002	Maize	cytosol	12.73	19.54
Bra013077.1-P	Field mustard	cytosol, plastid	46.61	19.33
Zm00001d053648_P005	Maize	cytosol, endoplasmic reticulum, plastid	10.91	19.13
Zm00001d019834_P003	Maize	cytosol, extracellular, plastid	3.14	18.63
Zm00001d051318_P001	Maize	cytosol	5.12	16.32
Zm00001d050144_P001	Maize	cytosol	4.63	16.18
Zm00001d035370_P003	Maize	plastid	10.58	15.69
Zm00001d005778_P001	Maize	plastid	6.78	14.59
Zm00001d023995_P002	Maize	extracellular, golgi, plastid	5.45	13.98
Zm00001d020031_P001	Maize	cytosol	2.48	9.55

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:100274086	Gene3D:3.40.525.10	MapMan:35.1	ProteinID:AQK71247.1	ProteinID:AQK71251.1
UniProt:B4FYZ5	EMBL:BT042333	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF137	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI00017B7571	EnsemblPlantsGene:Zm00001d016601	EnsemblPlants:Zm00001d016601_P006	EnsemblPlants:Zm00001d016601_T006	SEG:seg

Description

Phosphatidylinositol/phosphatidylcholine transfer protein SFH10

Coordinates

chr5:-:169533672..169538788

Molecular Weight (calculated)

67827.7 Da

IEP (calculated)

6.980

GRAVY (calculated)

-0.450

Length

605 amino acids

Sequence
(BLAST)

001: MAEVLSGSHE HRLSSALDGH YDEKRKSNVE YTEDEKKAVI AALKKKALSA SQKFRHSMKR GRKSSKVMSI SILDEREPEE VQAVDAFRQL LVLEELLPSQ
101: HDDYHMMLRF LKARKFDIEK AKQMWSDMLK WRKEFGADTI LEEFEFEEAD KVAECYPQGY HGVDKEGRPV YFERLGQIDV NRLMQVTTMD RFVKNHVKEF
201: EKNFAVKFPA CSIAAKHHID QSTTILDVQG VGMKQFSKAA RELIGMLQKI DGDNYPETLC RMFIINAGQG FRLLWGTVKS FLDPKTTAKI HVLGNKYQSK
301: LLEVIDASEL PEIFGGTCRC EGGCMKADKG PWKDPEIMKM VQSGDGRCGS LGTASFEAPE KMICEDDTYP KKQALFDGET QLAGDEHSQS QKISRGRIEH
401: PHVSPLHEEL IPTSIHTPGS PYSCDVPMVE EAIDAICKSH GTPPDEKIAI TKAIINVSNG SKPPLFAGII ALVMSIATMV RLTRSMMPGK VLGAAIGGAT
501: LSEGKSKVQE RQRSKLSEEA VEEAEDAVSA KRLSELEEKV IALLTKPASM PADKEEVLQA AVSRVSALEE ELAATKKTLQ ETLERQLEIV AYIEKKKKSK
601: RFFRW

Best Arabidopsis Sequence Match ( AT2G21540.6 )
(BLAST)

001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF

Arabidopsis Description

SFH3Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.