Factsheet for PGSC0003DMT400021690

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT4G36490.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g040280.1.1	Tomato	cytosol	96.19	97.16
PGSC0003DMT400043532	Potato	cytosol	70.86	76.84
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	70.2	73.87
KRH76738	Soybean	plastid	52.15	65.49
KRH28724	Soybean	plastid	51.99	65.01
AT4G36490.1	Thale cress	plastid	56.13	62.43
KRH24439	Soybean	plastid	33.77	62.2
KRH69861	Soybean	plastid	57.12	62.16
KRH08168	Soybean	plastid	57.12	62.16
KRH51503	Soybean	cytosol	58.11	61.26
KRH60806	Soybean	cytosol	57.95	61.19
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	55.46	61.13
CDY15887	Canola	cytosol	55.3	60.84
KRH29420	Soybean	cytosol, nucleus, plastid	56.62	60.75
CDX99586	Canola	cytosol	55.3	60.73
AT2G18180.1	Thale cress	plastid	55.63	60.22
AT4G34580.2	Thale cress	cytosol	54.14	59.03
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	47.68	59.02
CDX75444	Canola	cytosol	52.15	58.99
CDX69071	Canola	cytosol	51.82	58.61
Bra034638.1-P	Field mustard	cytosol	51.99	57.72
CDX89709	Canola	cytosol, mitochondrion	43.38	57.58
CDY45318	Canola	cytosol, plastid	47.52	57.4
VIT_03s0038g04480.t01	Wine grape	cytosol	58.61	57.1
GSMUA_Achr5P23630_001	Banana	cytosol	56.62	56.81
Bra011544.1-P	Field mustard	cytosol, plastid	46.36	56.57
GSMUA_Achr6P03210_001	Banana	cytosol	55.46	56.4
CDY12126	Canola	cytosol	49.5	55.89
Bra017663.1-P	Field mustard	cytosol, plastid	42.05	55.7
AT4G39180.1	Thale cress	cytosol	50.83	55.42
CDX90317	Canola	cytosol	49.17	55.31
Bra010699.1-P	Field mustard	cytosol	49.17	55.31
CDY17469	Canola	cytosol	52.15	55.17
AT2G16380.1	Thale cress	cytosol	48.68	53.75
CDX76291	Canola	cytosol	52.32	53.38
Os10t0122600-01	Rice	cytosol, nucleus, plastid	52.81	53.34
OQU84321	Sorghum	cytosol	49.67	53.19
CDX69225	Canola	mitochondrion	52.98	52.72
HORVU2Hr1G082530.1	Barley	cytosol	50.17	52.33
TraesCS2A01G327200.2	Wheat	nucleus	51.16	52.28
TraesCS2D01G335700.2	Wheat	nucleus	50.99	52.12
Os02t0440900-00	Rice	cytosol	51.49	52.01
Zm00001d016601_P006	Maize	cytosol	51.99	51.9
TraesCS2B01G354800.2	Wheat	nucleus	50.5	51.61
PGSC0003DMT400001942	Potato	cytosol	52.81	51.04
PGSC0003DMT400009598	Potato	cytosol	29.64	51.0
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	55.63	50.91
OQU85018	Sorghum	nucleus	51.16	50.41
PGSC0003DMT400043545	Potato	cytosol	53.15	49.92
TraesCS6A01G097200.1	Wheat	plastid	50.33	49.59
TraesCS6B01G125700.1	Wheat	plastid	50.33	49.43
TraesCS6D01G085200.1	Wheat	plastid	50.0	49.11
Os02t0133200-01	Rice	plasma membrane	50.66	48.42
HORVU6Hr1G017580.5	Barley	plastid	50.0	48.09
Zm00001d015175_P002	Maize	plastid	50.5	47.29
PGSC0003DMT400045517	Potato	cytosol	38.41	39.12
PGSC0003DMT400057292	Potato	nucleus	37.91	37.05
PGSC0003DMT400022405	Potato	cytosol, nucleus	33.44	34.71
PGSC0003DMT400057025	Potato	cytosol	14.24	25.52
PGSC0003DMT400034789	Potato	cytosol	14.07	25.15
CDY02262	Canola	cytosol, plastid	49.34	20.68
Bra013077.1-P	Field mustard	cytosol, plastid	49.34	20.42

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:102592305	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	UniProt:M1AFJ7	PFAM:PF00650
PFAM:PF03765	EnsemblPlantsGene:PGSC0003DMG400008414	PGSC:PGSC0003DMG400008414	EnsemblPlants:PGSC0003DMT400021690	PFscan:PS50191	PANTHER:PTHR23324
PANTHER:PTHR23324:SF55	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002964444
RefSeq:XP_006343504.1	SEG:seg	:	:	:	:

Description

Sec14 cytosolic factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008414]

Coordinates

chr11:-:17817430..17820744

Molecular Weight (calculated)

68642.6 Da

IEP (calculated)

9.012

GRAVY (calculated)

-0.641

Length

604 amino acids

Sequence
(BLAST)

001: MSGKMSTGPL ERPLRPSMEK IDIENTEEDK KPRLGSFKKK ALNASNKFRQ SLKKTGRRNS SRVMSVVFED EHDAEESKSV DAFRQALILD ELLPAQHDDY
101: HMMLRFLKAR KFELEKSKQM WSDMINWRKE FGADTIMQDF EFKEKEEVVK YYPQGHHGVD KEGRPVYIER IGQVDSTKLL QVTTMDRYLK YHVQEFERTF
201: NDKLPACSIA AKKHIDTSTT ILDVQGVGLK NFNKSARELL QCLQGVDGNN YPESLCRMYI INAGSGFRLL WNSVKSFLDP KTTAKINVLG NKYQSKLLEI
301: IDASELPEFL GGTCTCEDKG GCMLSDKGPW NDPEIMKMVH SGMHKCTKKT SIPVDEKTIS EDGNAKPKDA KKSNSINMRT ASSKIQRDHV SPTQLSTVHE
401: EDGINKKHPS AYDRDKYIPV VDKVIDPTIP KATKADNYAI AKASDFLPMH DISKSPDGFS NHLFTGVMTF VMGVVTMVRM TRNMPRKLTD STLLSGSLKG
501: VDMHVKPVHG QEYRLSGPAI SNNEYFSMMK RMGELEEKVI SLSNKPSSLP PEKEEMLNNV MSHVDKLEQE LCATKMALET ALSRQEELLA YIEKKKKKKN
601: FFGF

Best Arabidopsis Sequence Match ( AT2G18180.2 )
(BLAST)

001: MSLNVDLDVC VLERPNVCSF KKRSCSKLSC SLTKKRRSSK VMSVEIFEDE HDAEELKVVD AFRQVLILDE LLPDKHDDYH MMLRFLKARK FDLEKTNQMW
101: SDMLRWRKEF GADTVMEDFE FKEIDEVLKY YPQGHHGVDK EGRPVYIERL GQVDSTKLMQ VTTMDRYVNY HVMEFERTFN VKFPACSIAA KKHIDQSTTI
201: LDVQGVGLKN FNKAARDLIT RLQKVDGDNY PETLNRMFII NAGSGFRMLW NTVKSFLDPK TTAKIHVLGN KYQSKLLEII DASELPEFLG GSCTCADNGG
301: CMRSDKGPWN NPDIMKRVNN GDHICSKRSQ ADNAGENIIS QGNNSAVEEA PETDQSQPSP CQNVVVAHPA WNIPEAHKFS LSKRDVYAIQ EACKATNESG
401: RSPIFTGVMA FVMGVVTMIR VTKNVPRKLT ESTIYSSPVY CDENSMNKSS MHGKKMATTT ISGEDFMAVM KRMAELEQKV TNLSAQPATM PPEKEEMLNA
501: AISRADFLEQ ELAATKKALD DSLTRQEDLV AYVERKKKKK KLFTW

Arabidopsis Description

SFH10Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.