Factsheet for PGSC0003DMT400034789

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012790.1.1	Tomato	cytosol	94.67	94.67
VIT_10s0116g00400.t01	Wine grape	cytosol	72.19	72.19
KRH51210	Soybean	cytosol	67.75	70.46
KRH36621	Soybean	cytosol	68.34	70.21
KRH01941	Soybean	cytosol	67.16	70.06
KRH11617	Soybean	cytosol	68.05	69.91
CDY40544	Canola	cytosol	64.79	66.36
Bra022153.1-P	Field mustard	cytosol	64.79	66.16
Bra017468.1-P	Field mustard	cytosol	64.5	65.47
CDY28908	Canola	cytosol	63.91	65.26
CDY41066	Canola	cytosol	64.2	65.17
CDY25949	Canola	cytosol	63.91	64.86
AT5G47730.1	Thale cress	cytosol	65.38	64.81
CDX77792	Canola	cytosol	62.72	63.47
PGSC0003DMT400057025	Potato	cytosol	63.02	63.2
CDY17710	Canola	cytosol	62.43	63.17
Bra024920.1-P	Field mustard	cytosol	62.43	63.17
PGSC0003DMT400009598	Potato	cytosol	20.71	19.94
PGSC0003DMT400043532	Potato	cytosol	24.26	14.72
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	24.26	14.29
PGSC0003DMT400021690	Potato	nucleus	25.15	14.07
PGSC0003DMT400001942	Potato	cytosol	25.15	13.6
PGSC0003DMT400045517	Potato	cytosol	23.67	13.49
PGSC0003DMT400057292	Potato	nucleus	24.26	13.27
PGSC0003DMT400043545	Potato	cytosol	25.15	13.22
PGSC0003DMT400022405	Potato	cytosol, nucleus	18.64	10.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400034789	EnsemblPlantsGene:PGSC0003DMG400013366	EntrezGene:102582983	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	ncoils:Coil	PANTHER:PTHR23324	PANTHER:PTHR23324:SF140
PFAM:PF00650	PFscan:PS50191	PGSC:PGSC0003DMG400013366	RefSeq:XP_006352313.1	SEG:seg	SMART:SM00516
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000294E7E4	UniProt:M1B198	MapMan:35.1	:

Description

SEC14 cytosolic factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013366]

Coordinates

chr11:+:155120..158955

Molecular Weight (calculated)

38214.7 Da

IEP (calculated)

7.576

GRAVY (calculated)

-0.305

Length

338 amino acids

Sequence
(BLAST)

001: MCVISEEAIA QFEALMEQVD EALKTTFQNI HQGCTRDAYL RFLTAREGNV ANAHKMLVDS LTWRVENEID DILAKPIIPT ELYRAIRDSQ LIGMPGYTKE
101: GLPIFAFGAG LSTYDKASVH YYVQSHIQIN EYRDRVVLPA ASKKNGKHIS KSLKVLDMTG LKLSALNQIK LLTIISSIDD LNYPEKVVAY YIVNAPYIFS
201: ACWKVVKPLL QERTRKKVQV LSGCGQDDLL KIMDYSSLPH FCRREGSGSS RYSGSSNENC YSLDHPFHQQ LYDYIKQQAL LRRPVRPVKQ GSVHVDFPDA
301: VTEGTEFVQT LASEFQKFGK QNGLAQSLDD LNINDHRA

Best Arabidopsis Sequence Match ( AT5G47730.1 )
(BLAST)

001: MGIVSEEAID EFQELMDQVE EPLKKTYERV HQGYLRENLG RFLKARDWNV CKAHTMLVEC LRWRVDNEID SILSKPIVPT ELYRDVRDSQ LIGMSGYTKE
101: GLPVFAIGVG LSTFDKASVH YYVQSHIQIN EYRDRVLLPS ISKKNGRPIT TCVKVLDMTG LKLSALSQIK LVTIISTIDD LNYPEKTNTY YVVNAPYIFS
201: ACWKVVKPLL QERTRKKVHV LSGCGRDELL KIMDFTSLPH FCRSGSSGSS HHTQSANCFS INHPFHQQLY NYVKHHYETQ GQAEPAKQGS FHVGFPEPEA
301: ERCVIAKTIE SELHKFENRN GLAVSIDDRK SSHETLANGD L

Arabidopsis Description

At5g47730 [Source:UniProtKB/TrEMBL;Acc:Q9FIK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.