CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41066	Canola	cytosol	97.9	97.9
Bra017468.1-P	Field mustard	cytosol	97.0	97.0
CDY40544	Canola	cytosol	89.49	90.3
CDY28908	Canola	cytosol	89.49	90.03
CDX77792	Canola	cytosol	87.69	87.43
CDY17710	Canola	cytosol	87.39	87.13
AT5G47730.1	Thale cress	cytosol	89.19	87.1
KRH51210	Soybean	cytosol	72.37	74.15
KRH01941	Soybean	cytosol	71.77	73.77
KRH11617	Soybean	cytosol	71.77	72.64
KRH36621	Soybean	cytosol	71.47	72.34
VIT_10s0116g00400.t01	Wine grape	cytosol	72.37	71.3
GSMUA_Achr7P06060_001	Banana	cytosol	68.17	68.17
GSMUA_Achr3P12050_001	Banana	cytosol	68.17	67.96
GSMUA_Achr1P19200_001	Banana	cytosol	65.47	64.69
Solyc11g012790.1.1	Tomato	cytosol	65.47	64.5
GSMUA_Achr3P28070_001	Banana	cytosol	64.86	64.29
EER90026	Sorghum	cytosol	63.36	63.94
CDY52903	Canola	cytosol	62.76	63.91
PGSC0003DMT400034789	Potato	cytosol	64.86	63.91
CDY10527	Canola	cytosol	62.16	63.69
CDY42389	Canola	cytosol	62.16	63.69
CDY53762	Canola	cytosol	62.46	63.61
Os02t0200000-01	Rice	cytosol	62.46	63.61
GSMUA_Achr4P13090_001	Banana	cytosol	63.66	63.1
TraesCS6D01G149100.1	Wheat	cytosol	61.86	63.0
TraesCS6A01G164200.1	Wheat	cytosol	61.86	63.0
TraesCS6B01G188100.1	Wheat	cytosol	61.86	63.0
TraesCS7A01G378400.1	Wheat	cytosol	61.26	62.77
TraesCS7B01G280200.2	Wheat	cytosol	60.96	62.46
TraesCS7D01G375200.1	Wheat	cytosol	60.96	62.46
Zm00001d015785_P001	Maize	extracellular	61.26	62.39
EES04709	Sorghum	cytosol	60.66	61.77
GSMUA_Achr1P09480_001	Banana	cytosol	61.56	61.19
HORVU7Hr1G090330.11	Barley	cytosol, nucleus, plastid	60.96	59.71
HORVU6Hr1G032510.1	Barley	cytosol, nucleus, peroxisome	61.56	59.59
Zm00001d046538_P003	Maize	cytosol	63.36	53.69
Zm00001d053648_P005	Maize	cytosol, endoplasmic reticulum, plastid	51.95	50.14
Os06t0607200-01	Rice	cytosol	21.02	48.28
CDX99587	Canola	cytosol, mitochondrion	20.12	23.67
CDY15888	Canola	cytosol	19.82	23.32
CDX77773	Canola	cytosol	24.02	19.66
CDY17730	Canola	cytosol	23.72	19.65
CDY11954	Canola	cytosol	11.11	18.97
CDY11957	Canola	cytosol	21.32	15.96
CDX89709	Canola	cytosol, mitochondrion	21.02	15.38
CDX90317	Canola	cytosol	24.32	15.08
CDY12126	Canola	cytosol	24.02	14.95
CDY15887	Canola	cytosol	24.32	14.75
CDX99586	Canola	cytosol	24.32	14.73
CDY52084	Canola	cytosol	25.23	14.31
CDX69071	Canola	cytosol	22.52	14.04
CDX75444	Canola	cytosol	22.52	14.04
CDY45318	Canola	cytosol, plastid	21.02	14.0
CDX82040	Canola	cytosol	24.92	13.76
CDY39363	Canola	cytosol	24.32	13.68
CDY13810	Canola	cytosol	25.83	13.61
CDX77382	Canola	cytosol	25.23	13.57
CDY10540	Canola	cytosol, nucleus, plastid	26.13	13.53
CDY42378	Canola	nucleus	25.83	13.37
CDY29415	Canola	nucleus	24.32	13.17
CDY12125	Canola	cytosol	24.32	13.15
CDX90316	Canola	cytosol	24.32	13.11
CDY50018	Canola	vacuole	24.92	12.99
CDY17469	Canola	cytosol	22.22	12.96
CDY36780	Canola	plastid	21.92	12.81
CDX85889	Canola	cytosol	22.82	12.52
CDX68133	Canola	cytosol	22.82	12.5
CDX76291	Canola	cytosol	22.22	12.5
CDY17397	Canola	cytosol	21.92	12.27
CDX69225	Canola	mitochondrion	22.22	12.19
CDY51966	Canola	cytosol	21.62	12.1
CDY51073	Canola	mitochondrion, nucleus	16.52	10.76
CDY02262	Canola	cytosol, plastid	23.42	5.41
CDY36781	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY25949	EnsemblPlantsGene:GSBRNA2T00033459001	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR23324	PANTHER:PTHR23324:SF140	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	ProteinID:CDY25949	ProteinID:CDY25949.1	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EEE100	UniProt:A0A078GL17	MapMan:35.1	:

Description

BnaC09g20380DBnaC09g20380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL17]

Coordinates

chrLK032183:+:270318..272952

Molecular Weight (calculated)

37977.6 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.362

Length

333 amino acids

Sequence
(BLAST)

001: MGIVSEQAVD EFQELIDKVE EPLKTTFKNV HQGYLRETLI RFLKARDWNL IKAHTMLVEC LRWRVDNQID SILSKPIVPS ELYRDVRDSQ LIGMSGYTRE
101: GLPVFAIGVG LSTFDKASVH YYVQSHIQIN EYRDRVLLPS VSKKNGGPIT TCVKVLDMTG LKLSALSQIK LVTIISTIDD LNYPEKTNTY YVVNAPYIFS
201: ACWKVVKPLL QERTRKKVHV LSGCGKDELL KIMDYTSLPH FCRRGSSGSS HHTQSVDCFS IDHPFHQQLY NYVKHHYETQ GQAEPAKQGS FHVGFPEPVA
301: ERVEMAKTIE SKLHKFENCN DLSKPVDDRK ASS

Best Arabidopsis Sequence Match ( AT5G47730.1 )
(BLAST)

001: MGIVSEEAID EFQELMDQVE EPLKKTYERV HQGYLRENLG RFLKARDWNV CKAHTMLVEC LRWRVDNEID SILSKPIVPT ELYRDVRDSQ LIGMSGYTKE
101: GLPVFAIGVG LSTFDKASVH YYVQSHIQIN EYRDRVLLPS ISKKNGRPIT TCVKVLDMTG LKLSALSQIK LVTIISTIDD LNYPEKTNTY YVVNAPYIFS
201: ACWKVVKPLL QERTRKKVHV LSGCGRDELL KIMDFTSLPH FCRSGSSGSS HHTQSANCFS INHPFHQQLY NYVKHHYETQ GQAEPAKQGS FHVGFPEPEA
301: ERCVIAKTIE SELHKFENRN GLAVSIDDRK SSHETLANGD L

Arabidopsis Description

At5g47730 [Source:UniProtKB/TrEMBL;Acc:Q9FIK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.