Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g065700.2.1 | Tomato | cytosol | 49.66 | 39.13 |
| TraesCS7B01G280200.2 | Wheat | cytosol | 66.9 | 29.85 |
| EER90026 | Sorghum | cytosol | 67.59 | 29.7 |
| TraesCS7A01G378400.1 | Wheat | cytosol | 64.83 | 28.92 |
| TraesCS7D01G375200.1 | Wheat | cytosol | 64.14 | 28.62 |
| Os02t0200000-01 | Rice | cytosol | 62.07 | 27.52 |
| HORVU7Hr1G090330.11 | Barley | cytosol, nucleus, plastid | 63.45 | 27.06 |
| Zm00001d046538_P003 | Maize | cytosol | 64.14 | 23.66 |
| VIT_19s0015g00760.t01 | Wine grape | cytosol | 51.03 | 21.89 |
| GSMUA_Achr1P09480_001 | Banana | cytosol | 50.34 | 21.79 |
| KRH46410 | Soybean | cytosol | 50.34 | 21.6 |
| Os09t0258000-01 | Rice | cytosol | 49.66 | 21.49 |
| PGSC0003DMT400057025 | Potato | cytosol | 49.66 | 21.36 |
| CDY40544 | Canola | cytosol | 48.28 | 21.21 |
| CDY28908 | Canola | cytosol | 48.28 | 21.15 |
| CDY25949 | Canola | cytosol | 48.28 | 21.02 |
| Bra022153.1-P | Field mustard | cytosol | 47.59 | 20.85 |
| Bra017468.1-P | Field mustard | cytosol | 47.59 | 20.72 |
| CDY41066 | Canola | cytosol | 47.59 | 20.72 |
| KRH14208 | Soybean | cytosol | 45.52 | 20.5 |
| CDX77792 | Canola | cytosol | 46.9 | 20.36 |
| AT5G47730.1 | Thale cress | cytosol | 47.59 | 20.23 |
| Bra024920.1-P | Field mustard | cytosol | 46.21 | 20.06 |
| CDY17710 | Canola | cytosol | 46.21 | 20.06 |
| KRG98457 | Soybean | cytosol | 49.66 | 17.56 |
| KRG82898 | Soybean | cytosol | 22.07 | 17.02 |
| KRH46406 | Soybean | cytosol | 18.62 | 10.42 |
| Os07t0456500-01 | Rice | cytosol | 14.48 | 8.86 |
| KRH73923 | Soybean | cytosol | 11.72 | 8.1 |
| KRH46400 | Soybean | cytosol | 13.1 | 7.06 |
| KRH65859 | Soybean | cytosol | 6.9 | 6.99 |
| Os02t0721800-01 | Rice | cytosol | 23.45 | 5.56 |
| KRH75081 | Soybean | extracellular, mitochondrion | 4.14 | 4.88 |
| Os02t0440900-00 | Rice | cytosol | 20.0 | 4.85 |
| Os10t0122600-01 | Rice | cytosol, nucleus, plastid | 20.0 | 4.85 |
| Os08t0497300-01 | Rice | cytosol, plastid | 19.31 | 4.64 |
| Os09t0481100-01 | Rice | nucleus | 19.31 | 4.58 |
| Os05t0545000-01 | Rice | cytosol, nucleus, plastid | 19.31 | 4.57 |
| Os08t0341700-01 | Rice | nucleus | 20.0 | 4.55 |
| Os02t0133200-01 | Rice | plasma membrane | 17.93 | 4.11 |
| Os01t0701900-01 | Rice | nucleus | 17.93 | 3.87 |
| Os02t0133100-01 | Rice | cytosol | 0.69 | 0.24 |
| KRG82897 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os06t0607200-01 | EnsemblPlantsGene:Os06g0607200 | Gene3D:3.40.525.10 | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf |
| InterPro:IPR036865 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF90 | PFAM:PF03765 | ProteinID:BAS98541.1 | SMART:SM01100 |
| SUPFAM:SSF46938 | UniParc:UPI0003938D63 | UniProt:A0A0P0WYN1 | MapMan:35.2 | : | : |
Description
Similar to Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal. (Os06t0607200-01)
Coordinates
chr6:-:24142517..24147434
Molecular Weight (calculated)
16821.5 Da
IEP (calculated)
6.774
GRAVY (calculated)
-0.024
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAAACDAAV EELTRLLDQV EEPLKQTFQN VHQGYPTDTL VRFLKAREWH VSKACDMLVD SLNWRIQNEI DSILEKPIIP VDLYRSIRET QLVGLSGYSK
101: ESFYFSRASQ YLPLVLDRVH MTKLRFITMC NLIFKSMSTV TVLFW
101: ESFYFSRASQ YLPLVLDRVH MTKLRFITMC NLIFKSMSTV TVLFW
001: MGIVSEEAID EFQELMDQVE EPLKKTYERV HQGYLRENLG RFLKARDWNV CKAHTMLVEC LRWRVDNEID SILSKPIVPT ELYRDVRDSQ LIGMSGYTKE
101: GLPVFAIGVG LSTFDKASVH YYVQSHIQIN EYRDRVLLPS ISKKNGRPIT TCVKVLDMTG LKLSALSQIK LVTIISTIDD LNYPEKTNTY YVVNAPYIFS
201: ACWKVVKPLL QERTRKKVHV LSGCGRDELL KIMDFTSLPH FCRSGSSGSS HHTQSANCFS INHPFHQQLY NYVKHHYETQ GQAEPAKQGS FHVGFPEPEA
301: ERCVIAKTIE SELHKFENRN GLAVSIDDRK SSHETLANGD L
101: GLPVFAIGVG LSTFDKASVH YYVQSHIQIN EYRDRVLLPS ISKKNGRPIT TCVKVLDMTG LKLSALSQIK LVTIISTIDD LNYPEKTNTY YVVNAPYIFS
201: ACWKVVKPLL QERTRKKVHV LSGCGRDELL KIMDFTSLPH FCRSGSSGSS HHTQSANCFS INHPFHQQLY NYVKHHYETQ GQAEPAKQGS FHVGFPEPEA
301: ERCVIAKTIE SELHKFENRN GLAVSIDDRK SSHETLANGD L
Arabidopsis Description
At5g47730 [Source:UniProtKB/TrEMBL;Acc:Q9FIK6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.