Factsheet for Os02t0133200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 4
plastid 5

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	Os03t0596900-01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84321	Sorghum	cytosol	74.05	82.98
TraesCS6A01G097200.1	Wheat	plastid	78.96	81.4
TraesCS6B01G125700.1	Wheat	plastid	78.64	80.81
TraesCS6D01G085200.1	Wheat	plastid	77.85	80.0
HORVU6Hr1G017580.5	Barley	plastid	78.64	79.14
Zm00001d015175_P002	Maize	plastid	78.48	76.9
GSMUA_Achr6P03210_001	Banana	cytosol	56.01	59.6
KRH76738	Soybean	plastid	45.25	59.46
GSMUA_Achr5P23630_001	Banana	cytosol	56.49	59.3
KRH28724	Soybean	plastid	44.62	58.39
Os10t0122600-01	Rice	cytosol, nucleus, plastid	54.27	57.36
AT4G36490.1	Thale cress	plastid	49.21	57.27
Os02t0440900-00	Rice	cytosol	54.11	57.19
KRH08168	Soybean	plastid	49.37	56.22
KRH69861	Soybean	plastid	49.05	55.86
KRH24439	Soybean	plastid	28.96	55.79
CDX75444	Canola	cytosol	45.89	54.31
CDX89709	Canola	cytosol, mitochondrion	38.92	54.07
CDX69071	Canola	cytosol	45.57	53.93
AT2G18180.1	Thale cress	plastid	47.47	53.76
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	55.85	53.48
PGSC0003DMT400043532	Potato	cytosol	46.84	53.14
Bra034638.1-P	Field mustard	cytosol	45.41	52.76
Bra011544.1-P	Field mustard	cytosol, plastid	41.3	52.73
AT4G34580.2	Thale cress	cytosol	46.04	52.53
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	47.63	52.44
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	47.47	52.26
KRH29420	Soybean	cytosol, nucleus, plastid	46.52	52.22
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	45.09	52.01
KRH51503	Soybean	cytosol	47.15	52.01
CDY45318	Canola	cytosol, plastid	41.14	52.0
CDY15887	Canola	cytosol	45.09	51.91
Solyc10g053900.1.1	Tomato	cytosol, plastid	46.68	51.85
CDX99586	Canola	cytosol	45.09	51.82
KRH60806	Soybean	cytosol	46.84	51.75
CDY12126	Canola	cytosol	43.51	51.4
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	43.51	51.31
CDX90317	Canola	cytosol	43.51	51.21
Solyc11g040280.1.1	Tomato	cytosol	48.42	51.17
Bra010699.1-P	Field mustard	cytosol	43.35	51.02
PGSC0003DMT400021690	Potato	nucleus	48.42	50.66
CDY17469	Canola	cytosol	45.73	50.61
Bra017663.1-P	Field mustard	cytosol, plastid	36.39	50.44
AT2G16380.1	Thale cress	cytosol	43.51	50.27
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	38.61	50.0
AT4G39180.1	Thale cress	cytosol	43.35	49.46
VIT_03s0038g04480.t01	Wine grape	cytosol	48.26	49.19
CDX76291	Canola	cytosol	45.73	48.82
CDX69225	Canola	mitochondrion	45.09	46.95
Os05t0545000-01	Rice	cytosol, nucleus, plastid	43.83	45.19
Os02t0133100-01	Rice	cytosol	29.11	43.5
Os07t0456500-01	Rice	cytosol	14.87	39.66
Os08t0341700-01	Rice	nucleus	39.24	38.93
Os08t0497300-01	Rice	cytosol, plastid	36.71	38.41
Os09t0481100-01	Rice	nucleus	37.03	38.3
Os01t0701900-01	Rice	nucleus	40.51	38.15
Os02t0721800-01	Rice	cytosol	36.71	37.91
Os09t0258000-01	Rice	cytosol	13.77	25.97
Os02t0200000-01	Rice	cytosol	12.66	24.46
CDY02262	Canola	cytosol, plastid	43.67	19.15
Bra013077.1-P	Field mustard	cytosol, plastid	43.67	18.92
Os06t0607200-01	Rice	cytosol	4.11	17.93

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	EntrezGene:4328209	EMBL:AK100898	ProteinID:BAD08000.1
ProteinID:BAF07716.1	ProteinID:BAS76840.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	EnsemblPlantsGene:Os02g0133200	EnsemblPlants:Os02t0133200-01	PFAM:PF00650
PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	UniProt:Q6Z6I5
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0000236879	RefSeq:XP_015626710.1
SEG:seg	:	:	:	:	:

Description

Sec14-nodulin domain-containing protein 3, Sec14-nodulin domain protein 3Similar to Phosphatidylinositol transfer-like protein IV. (Os02t0133200-01)

Coordinates

chr2:-:1748459..1753122

Molecular Weight (calculated)

70500.3 Da

IEP (calculated)

7.590

GRAVY (calculated)

-0.540

Length

632 amino acids

Sequence
(BLAST)

001: MSSAAVMPTP SMNSSSAGAA AAAAAAEGGG GEDERRARAL SSSSSSLRQR AMSASSKLLR TSLSRSSKGA AARQRSSKVM SVSIEDVRDA EEMKSVDAFR
101: QTLVLEELLP ARHDDYHMML RFLRARKFDI DKSKQMWSDM LQWRKEFGSD TILDDFQFEE MDQVLEHYPQ GHHGVDRDGR PVYIEKLGAI DTAKLLQVTS
201: MDRYVKYHVR EFERAFAVKF PACSIAAKRH VDQSTTILDV SGVGYKNFNK AARDLIGRLQ KVDGDNYPET LCRMFIINAG QGFRLLWNTV KSFLDPKTTA
301: KIHVLGNKYQ SKLLEVIDPS ELPEFLGGTC TCEGGCMRSD KGPWKDPEII KMVQCGMGRC GFNSSGHTEA DEKMITEDDI VAIPKKQESI RRDSVDSPKI
401: PREKIEHPQM SPLHEMSTSE SKAPPGQEGS SSRYDDLFPM PDKNMDFNWN GEVSAEKLAL ARDMYASLPD AYKHGDAGDR QVVTGFMAFV MGVVAMFRVG
501: KIAPKRAMDA AMGIATMEAM AKNRKLMQQQ QRQLEQLPGP DTVTVSTAQY EALIKRLGDL EEKVAALTSR PPEMPADKED LLKAAVTRVE ALETELESTK
601: KLLETSSGQQ EEVLAYIEKK KKKRGMQNPF RW

Best Arabidopsis Sequence Match ( AT4G36490.1 )
(BLAST)

001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW

Arabidopsis Description

SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.