CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75444	Canola	cytosol	98.88	98.88
Bra011544.1-P	Field mustard	cytosol, plastid	90.26	97.37
AT4G34580.2	Thale cress	cytosol	91.2	87.91
CDY17469	Canola	cytosol	90.45	84.59
CDX76291	Canola	cytosol	90.82	81.93
CDY45318	Canola	cytosol, plastid	75.66	80.8
CDX89709	Canola	cytosol, mitochondrion	63.11	74.07
CDY15888	Canola	cytosol	33.33	62.9
CDX99587	Canola	cytosol, mitochondrion	32.96	62.19
CDY15887	Canola	cytosol	63.11	61.38
CDX99586	Canola	cytosol	62.92	61.09
CDY12126	Canola	cytosol	58.24	58.13
CDX90317	Canola	cytosol	58.05	57.73
KRH24439	Soybean	plastid	34.64	56.4
KRH51503	Soybean	cytosol	59.55	55.5
PGSC0003DMT400043532	Potato	cytosol	57.87	55.48
Solyc10g053900.1.1	Tomato	cytosol, plastid	58.05	54.48
KRH29420	Soybean	cytosol, nucleus, plastid	57.3	54.35
KRH60806	Soybean	cytosol	58.05	54.2
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	58.05	54.01
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	57.49	53.48
Solyc11g040280.1.1	Tomato	cytosol	58.05	51.84
PGSC0003DMT400021690	Potato	nucleus	58.61	51.82
HORVU2Hr1G082530.1	Barley	cytosol	56.18	51.81
TraesCS2D01G335700.2	Wheat	nucleus	56.93	51.44
TraesCS2A01G327200.2	Wheat	nucleus	56.93	51.44
TraesCS2B01G354800.2	Wheat	nucleus	56.55	51.1
OQU84321	Sorghum	cytosol	53.93	51.06
GSMUA_Achr5P23630_001	Banana	cytosol	56.93	50.5
Os02t0440900-00	Rice	cytosol	56.37	50.33
Os10t0122600-01	Rice	cytosol, nucleus, plastid	55.99	50.0
GSMUA_Achr6P03210_001	Banana	cytosol	55.62	50.0
OQU85018	Sorghum	nucleus	56.74	49.43
Zm00001d016601_P006	Maize	cytosol	55.99	49.42
CDX90316	Canola	cytosol	55.06	47.57
CDY12125	Canola	cytosol	54.87	47.56
CDX82040	Canola	cytosol	52.81	46.77
CDY11954	Canola	cytosol	16.85	46.15
CDX69225	Canola	mitochondrion	52.43	46.13
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	56.93	46.06
CDY39363	Canola	cytosol	50.94	45.95
Zm00001d015175_P002	Maize	plastid	55.43	45.89
TraesCS6A01G097200.1	Wheat	plastid	52.62	45.84
Os02t0133200-01	Rice	plasma membrane	53.93	45.57
TraesCS6D01G085200.1	Wheat	plastid	52.25	45.37
TraesCS6B01G125700.1	Wheat	plastid	52.06	45.2
HORVU6Hr1G017580.5	Barley	plastid	53.0	45.06
CDY13810	Canola	cytosol	53.18	44.94
CDY29415	Canola	nucleus	50.75	44.06
CDX68133	Canola	cytosol	48.69	42.76
CDX85889	Canola	cytosol	48.31	42.5
CDY11957	Canola	cytosol	33.71	40.45
CDY17730	Canola	cytosol	30.15	40.05
CDX77773	Canola	cytosol	30.15	39.56
CDY52084	Canola	cytosol	40.07	36.46
CDX77382	Canola	cytosol	40.26	34.73
CDY51966	Canola	cytosol	38.2	34.29
CDY17397	Canola	cytosol	37.83	33.95
CDY50018	Canola	vacuole	40.26	33.65
CDY42378	Canola	nucleus	40.45	33.59
CDY10540	Canola	cytosol, nucleus, plastid	40.07	33.28
CDY36780	Canola	plastid	34.64	32.46
CDY51073	Canola	mitochondrion, nucleus	30.71	32.09
CDY02262	Canola	cytosol, plastid	70.97	26.3
CDY52903	Canola	cytosol	14.98	24.46
CDY53762	Canola	cytosol	14.98	24.46
CDY40544	Canola	cytosol	14.79	23.94
CDY28908	Canola	cytosol	14.79	23.87
CDY10527	Canola	cytosol	14.23	23.38
CDY42389	Canola	cytosol	14.23	23.38
CDX77792	Canola	cytosol	14.42	23.05
CDY41066	Canola	cytosol	14.04	22.52
CDY25949	Canola	cytosol	14.04	22.52
CDY17710	Canola	cytosol	14.04	22.46
CDY36781	Canola	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078BW90	EnsemblPlants:CDX69071	ProteinID:CDX69071
ProteinID:CDX69071.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
EnsemblPlantsGene:GSBRNA2T00130843001	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF77	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0004EF4A9B	SEG:seg	:	:	:

Description

BnaC01g03820D

Coordinates

chrLK031789:+:2759794..2763603

Molecular Weight (calculated)

60976.7 Da

IEP (calculated)

8.509

GRAVY (calculated)

-0.524

Length

534 amino acids

Sequence
(BLAST)

001: MSEEERKIAK MSSLKKKAIN ASNRFKNSFS KKGRKSSSKV MCVTIEDDID AEDLQSLDAF RQALVLDELL PSNLDDLHMM LRFLRARKFD IEKAKQMWSD
101: MIQWRKDFGA DKIIEEFEFE EIDEVMKHYP QGYHGVDKEG RPVYIERLGQ IDANKLLQVT TMDRYVKYHV REFEKTFKIK FPACSVAAKK HIDQSTTILD
201: VQGVGLKNFS KSARELLQRL LKIDNDNYPE TLNRMFIINA GSGFRLLWST VKSFLDPKTT AKIHVLGNKY HSKLLEVIDA SDLPEFFGGA CTCEDKGGCM
301: RSDKGPWNDP EVLKMAINRE SKCSPISEDD LKHVDQGRST SFQESLDRSS KKMDEDNVHE KQVATIDKSV MEWPTKTQKI ENFPVSKGLE CYVRKGAPKK
401: GDGLLVGGVM AFVMGIVAMV RLSKDVPRKL TEAALYGNSQ NQAQFAAPVS SSEYMLMVKR MAELEEKCMF LDLKPANVDT ETEEKLQAAL NRVQVLEQEL
501: SETKKALEET LVGQKEILAY IEKKKKKKKL FFGF

Best Arabidopsis Sequence Match ( AT4G34580.1 )
(BLAST)

001: MAETKPEIEM SEEERKIVKI SSLKKKAINA SNRFKNSFKK KGRRSSSRVM SVPIEDDIDA EDLQALDAFR QALILDELLP SKLDDLHMML RFLRARKFDI
101: EKAKQMWSDM IQWRKDFGAD TIIEDFDFEE IDEVMKHYPQ GYHGVDKEGR PVYIERLGQI DANKLLQVTT MDRYVKYHVK EFEKTFKVKF PSCSVAANKH
201: IDQSTTILDV QGVGLKNFSK SARELLQRLC KIDNENYPET LNRMFIINAG SGFRLLWSTV KSFLDPKTTA KIHVLGNKYH SKLLEVIDAS ELPEFFGGAC
301: TCEDKGGCMR SDKGPWNDPE VLKIAINREA KCSPISEDEH KHVDQGRSTS GFESLERIKK KTDEDNVYEK QIATIDKSMD MAWLAKTQKA ENFPISKGLE
401: CYVRKGAPKK GDGLLVGGVM AFVMGIVAMV RLSKDVPRKL TEAALYGNSV CYEESTKSKQ NQGQFAAPVS SSEYMLMVKR MAELEDKCMF LDLKPAHVES
501: EKEEKLQAAL NRVQVLEQEL TETKKALEEA LVSQKEILAY IEKKKKKKKL FFGF

Arabidopsis Description

SFH1SRH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V672]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.