CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68133	Canola	cytosol	96.21	96.05
AT1G75370.2	Thale cress	cytosol	83.2	75.6
CDY39363	Canola	cytosol	68.7	70.44
CDY29415	Canola	nucleus	71.33	70.41
CDY15888	Canola	cytosol	30.48	65.37
CDX99587	Canola	cytosol, mitochondrion	30.15	64.66
Solyc04g080690.1.1	Tomato	cytosol	27.51	58.6
CDX82040	Canola	cytosol	56.84	57.21
CDY12125	Canola	cytosol	57.83	56.98
CDY13810	Canola	cytosol	59.14	56.8
CDX90316	Canola	cytosol	57.5	56.47
PGSC0003DMT400009598	Potato	cytosol	31.8	54.99
CDX99586	Canola	cytosol	44.65	49.27
CDY15887	Canola	cytosol	44.48	49.18
CDX75444	Canola	cytosol	42.67	48.5
CDX69071	Canola	cytosol	42.5	48.31
CDX89709	Canola	cytosol, mitochondrion	36.08	48.13
CDY12126	Canola	cytosol	42.34	48.04
CDX90317	Canola	cytosol	42.17	47.67
CDY17469	Canola	cytosol	43.82	46.58
CDY45318	Canola	cytosol, plastid	38.06	46.2
CDX76291	Canola	cytosol	43.82	44.93
CDY11954	Canola	cytosol	14.33	44.62
CDY11957	Canola	cytosol	32.13	43.82
CDX69225	Canola	mitochondrion	42.17	42.17
CDY52084	Canola	cytosol	38.22	39.52
CDY10540	Canola	cytosol, nucleus, plastid	40.86	38.57
CDY42378	Canola	nucleus	40.69	38.41
CDX77773	Canola	cytosol	25.7	38.33
CDX77382	Canola	cytosol	39.04	38.29
CDY17730	Canola	cytosol	25.21	38.06
CDY50018	Canola	vacuole	38.22	36.31
CDY51966	Canola	cytosol	35.58	36.3
CDY17397	Canola	cytosol	35.09	35.8
CDY36780	Canola	plastid	32.95	35.09
CDY51073	Canola	mitochondrion, nucleus	28.67	34.05
CDY53762	Canola	cytosol	14.17	26.3
CDY52903	Canola	cytosol	14.17	26.3
CDY42389	Canola	cytosol	13.84	25.85
CDY10527	Canola	cytosol	13.67	25.54
CDY40544	Canola	cytosol	13.34	24.55
CDY28908	Canola	cytosol	13.34	24.47
CDY41066	Canola	cytosol	12.85	23.42
CDY25949	Canola	cytosol	12.52	22.82
CDX77792	Canola	cytosol	12.36	22.46
CDY17710	Canola	cytosol	12.19	22.16
CDY02262	Canola	cytosol, plastid	41.35	17.42
CDY36781	Canola	extracellular	0.16	0.6

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078DBZ1	EnsemblPlants:CDX85889	ProteinID:CDX85889
ProteinID:CDX85889.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
EnsemblPlantsGene:GSBRNA2T00143698001	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF145	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0004EDD7BA	SEG:seg	:	:	:

Description

BnaC06g22450D

Coordinates

chrLK031843:-:572967..576683

Molecular Weight (calculated)

69001.3 Da

IEP (calculated)

8.064

GRAVY (calculated)

-0.616

Length

607 amino acids

Sequence
(BLAST)

001: MSGPLDFARP CFEGCSSNDE RRERRSDFEV SEEEKRTRIG TFKKKAAKAS SKLRHSLKKK GSSGRRRSTD RNFSLTIEDI HDVEELRAVD ELRSLLLSEN
101: LLPPKLDDYH IMLRFLKARK FDVGKTKLMW SNMIQWRQEF GTDTIVEDFE FQEVDEVLRY YPQGYHGVDK EGRPVYIERL GKVDPAKLIQ VTTLERYIRY
201: HVREFEKTVS IKFPACCIAA KRHIDSSTTI LDVQGVGLKN FSKPARDLII QLQKIDNDNY PETLQRMFII NAGPGFKLLW GSVKSFLDPK TVTKIHVVGN
301: KYQNKLLEII DASQLPDFLG GTCTCADEGG CMRSDKGPWK DPEILTMVQS GGTLCRHASI LNSGSRMNSC DKPPFPGSKV SDTSTAESSS ELEEMASPKA
401: NKESHVPKLT PVCEDIRTNG RSYPTDSSEY DSPMVDKVVD VAWMANEKPK TPQSPKESTG LGKLGPVSHI LRWLATLFTF LVSAVALPKS KEHSQSESSV
501: DEPIARESRP PSPVYSTVRE RNLVASVVNR LGDLEKQVET LHSKRHEMPR EKEELLNTAV YRVDALEAEL IATKKALHEA LMRQDDLLAY IDREEDEKYH
601: RRKKLCW

Best Arabidopsis Sequence Match ( AT1G75370.1 )
(BLAST)

001: MSGSLDRFAR PCFEGVSSND ERRERRSDFE VSEDEKKTRI GNFNFKKKAA KASSKLRHSL KKKGSSRRRS SDRTFSLTIE DIHDVEELRA VDEFRNLLVS
101: ENLLPPTLDD YHIMLRFLKA RKFDIGKTKL MWSNMIKWRK DFGTDTIFED FEFEEFDEVL KYYPHGYHGV DKEGRPVYIE RLGLVDPAKL MQVTTVERFI
201: RYHVREFEKT VNIKLPACCI AAKRHIDSST TILDVQGVGF KNFSKPARDL IIQLQKIDND NYPETLHRMF IINGGSGFKL VWATVKQFLD PKTVTKIHVI
301: GNKYQNKLLE IIDASQLPDF LGGTCTCADR GGCMRSDKGP WNDPEILKML QSGGPLCRHN SALNSFSRVS SCDKPSFSGI KASDTSTAES GSEVEEMASP
401: KVNRELRVPK LTPVCEDIRG TAISYPTDSS EYDSPMVDKV VDVAWMAHEK PKASKGSEDT PDSGKIRTVT YIWRWLMMFF VNLFTLLISL ALPQREGHSQ
501: SESSVDGPNA RESRPPSPAF ATIAERNVFS SVVNRLGDLE KQVETLHSKR HEMPREKEEL LNTAVYRVDA LEAELIATKK ALHEALMRQD DLLAYIDREE
601: DEKYHKKKKV CW

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:F4HZ25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.