CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77382	Canola	cytosol	95.57	90.63
AT3G24840.3	Thale cress	cytosol	80.92	81.9
KRG99773	Soybean	cytosol, nucleus, plastid	54.51	53.87
CDY15888	Canola	cytosol	25.72	53.36
VIT_07s0005g06640.t01	Wine grape	endoplasmic reticulum	55.2	53.03
CDX99587	Canola	cytosol, mitochondrion	25.38	52.65
KRH46724	Soybean	cytosol, nucleus, plastid	53.15	52.53
Solyc09g060090.2.1	Tomato	cytosol	52.81	52.28
PGSC0003DMT400045517	Potato	cytosol	52.64	52.11
GSMUA_Achr9P01730_001	Banana	plastid	28.96	49.28
CDY11957	Canola	cytosol	34.58	45.62
CDY11954	Canola	cytosol	14.14	42.56
CDX90317	Canola	cytosol	38.5	42.09
CDY12126	Canola	cytosol	38.33	42.06
GSMUA_Achr6P06610_001	Banana	mitochondrion	30.49	41.15
CDX75444	Canola	cytosol	36.97	40.64
CDX69071	Canola	cytosol	36.46	40.07
CDX82040	Canola	cytosol	41.06	39.97
CDY15887	Canola	cytosol	37.31	39.89
CDX99586	Canola	cytosol	37.31	39.82
CDX89709	Canola	cytosol, mitochondrion	30.66	39.56
CDY50018	Canola	vacuole	42.76	39.28
CDX90316	Canola	cytosol	40.89	38.84
CDY13810	Canola	cytosol	41.74	38.77
CDX68133	Canola	cytosol	40.03	38.65
CDY12125	Canola	cytosol	40.55	38.64
CDY45318	Canola	cytosol, plastid	32.88	38.6
CDY42378	Canola	nucleus	42.25	38.57
CDY51073	Canola	mitochondrion, nucleus	33.39	38.36
CDY10540	Canola	cytosol, nucleus, plastid	41.91	38.26
CDX85889	Canola	cytosol	39.52	38.22
CDY39363	Canola	cytosol	38.33	38.01
CDY17469	Canola	cytosol	36.63	37.65
CDY51966	Canola	cytosol	37.48	36.97
CDY29415	Canola	nucleus	38.67	36.91
CDY17730	Canola	cytosol	25.21	36.82
CDY17397	Canola	cytosol	37.14	36.64
CDX76291	Canola	cytosol	36.63	36.32
CDX77773	Canola	cytosol	25.04	36.12
CDY36780	Canola	plastid	34.92	35.96
CDX69225	Canola	mitochondrion	36.12	34.93
CDY52903	Canola	cytosol	14.65	26.3
CDY53762	Canola	cytosol	14.65	26.3
CDY28908	Canola	cytosol	14.65	25.98
CDY40544	Canola	cytosol	14.48	25.76
CDY41066	Canola	cytosol	14.31	25.23
CDY25949	Canola	cytosol	14.31	25.23
CDY42389	Canola	cytosol	13.8	24.92
CDY10527	Canola	cytosol	13.8	24.92
CDX77792	Canola	cytosol	13.46	23.65
CDY17710	Canola	cytosol	13.29	23.35
CDY02262	Canola	cytosol, plastid	36.12	14.71
CDY36781	Canola	extracellular	0.34	1.19

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	UniProt:A0A078IRM0	EnsemblPlants:CDY52084	ProteinID:CDY52084
ProteinID:CDY52084.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
EnsemblPlantsGene:GSBRNA2T00004886001	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFscan:PS50191	PANTHER:PTHR23324
PANTHER:PTHR23324:SF100	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EEC05B
SEG:seg	:	:	:	:	:

Description

BnaCnng21850DBnaCnng21850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRM0]

Coordinates

chrLK033055:+:19070..22762

Molecular Weight (calculated)

67187.0 Da

IEP (calculated)

8.947

GRAVY (calculated)

-0.530

Length

587 amino acids

Sequence
(BLAST)

001: MADKTDIFVF FDLTALGEIL SVPETDKGKS KDIIDNSEDE KILPRARGSR SLKKKAIRAS TKLTHSLRKR GKRVADQYAA IVIEDVRDAE EEKAVNAFRE
101: ALVSLDLLPP RHDDYHTMLR FLKARRFDRD KTVHMWEEML KWRKDNGVDT IMQDFVYEEY EEVQQYYPHG YHGVDRGGRP VYIERLGKVD PGKLMKVTSL
201: ERFLRYHVQG FEKTFSEKFP ACSIAAKRHI NSSTTIIDVQ GVSWMKLRKL AQDLVMRMQK IDGDNYPETL NQMYIVNAGN GFSIIWSTVK GFLDPKTSSK
301: IHVLKNKDRS HLLEIIDPGE LPDFLGGNCS CANEGGCMRF NKGPWNDPEI MKLVRLRDAT YKIKEIELPE NGEVAKLFAL PHVNTEISLP DGGQVRDTSA
401: QLSHQLEAVG TGRIVQSDST NQLSSNLTEE RSLKKSLQKV ASSLARFIFQ LVASLCLMFR ILGRLVNKKP ENQLRPPVLD SPPPPTQLLQ RRESLHPCWQ
501: RLQNLESMVT VLFDKPTNIP QEKEDILRDS LDRIKGIEQD LQKTKKALLL TASKQLELAE SFESLKESTS MGMRSCWPRH CRNFQVE

Best Arabidopsis Sequence Match ( AT3G24840.2 )
(BLAST)

001: MPALGEILLV PETDKGKSKD YIEVSEDEKI TRTRSRSLKK KAIKASNKLT HSLRKRGKRV ADQYAPIVIE DVRDEEEEKA VNVFRKALVS LDLLPPRHDD
101: YHTMLRFLKA RRFDLEKTVQ MWEEMLKWRK ENGVDTIIQD FVYDEYEEVQ QYYPHGYHGV DREGRPVYIE RLGKIDPGKL MKVTTLERFL RYHVQGFEKT
201: FSEKFPACSI AAKRHINSST TIIDVHGVSW MSFRKLAQDL VMRMQKIDGD NYPETLNQMY IINAGNGFKL VWNTVKGFLD PKTTSKIHVL GNKYRSHLLE
301: IIDPSELPEF LGGNCKCAHE GGCMRFNKGP WNDPEIMKLV RSRDAMYKPK EMGLLENGEV AKLFSLRHVN TDMSSPDGGH VRERESHPEH DKRAQLSNQA
401: EAVGVGRMEQ SDSTSPLPNN LAVERSLTTS LQKVASFLAR FILQLLGSLC LMFRILGRLV NKQPENQLRP ELSVSVSQQQ VPPPQVHPCW LRLQNLETMV
501: TVLCDKPSSI PQEKEDILRD SLDRIKSIEQ DLQKTKKALF LTASKQIELA ECFENLKESS STGMRSCWPR HCRNFQAET

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.