CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29415	Canola	nucleus	97.3	93.66
AT1G19650.1	Thale cress	cytosol	81.25	79.11
CDX68133	Canola	cytosol	70.61	68.75
CDX85889	Canola	cytosol	70.44	68.7
CDY15888	Canola	cytosol	32.26	67.49
CDX99587	Canola	cytosol, mitochondrion	32.09	67.14
Solyc04g080690.1.1	Tomato	cytosol	27.87	57.89
CDY12125	Canola	cytosol	59.97	57.63
CDX82040	Canola	cytosol	58.61	57.55
CDX90316	Canola	cytosol	59.97	57.44
CDY13810	Canola	cytosol	59.29	55.54
PGSC0003DMT400009598	Potato	cytosol	32.6	54.99
CDX75444	Canola	cytosol	46.11	51.12
CDX69071	Canola	cytosol	45.95	50.94
CDX89709	Canola	cytosol, mitochondrion	38.18	49.67
CDY17469	Canola	cytosol	46.62	48.34
CDY15887	Canola	cytosol	44.76	48.27
CDX99586	Canola	cytosol	44.76	48.18
CDY45318	Canola	cytosol, plastid	40.54	48.0
CDY12126	Canola	cytosol	42.4	46.92
CDX76291	Canola	cytosol	46.62	46.62
CDX90317	Canola	cytosol	42.06	46.37
CDY11954	Canola	cytosol	15.2	46.15
CDY11957	Canola	cytosol	32.6	43.37
CDX69225	Canola	mitochondrion	41.39	40.36
CDX77773	Canola	cytosol	26.52	38.57
CDY52084	Canola	cytosol	38.01	38.33
CDY17730	Canola	cytosol	26.01	38.31
CDY42378	Canola	nucleus	40.54	37.33
CDY10540	Canola	cytosol, nucleus, plastid	40.2	37.01
CDY51966	Canola	cytosol	37.16	36.97
CDX77382	Canola	cytosol	38.51	36.83
CDY17397	Canola	cytosol	36.66	36.47
CDY50018	Canola	vacuole	38.51	35.68
CDY36780	Canola	plastid	34.12	35.44
CDY51073	Canola	mitochondrion, nucleus	28.55	33.07
CDY52903	Canola	cytosol	14.53	26.3
CDY53762	Canola	cytosol	14.53	26.3
CDY42389	Canola	cytosol	13.85	25.23
CDY10527	Canola	cytosol	13.68	24.92
CDY28908	Canola	cytosol	13.68	24.47
CDY41066	Canola	cytosol	13.68	24.32
CDY25949	Canola	cytosol	13.68	24.32
CDY40544	Canola	cytosol	13.34	23.94
CDX77792	Canola	cytosol	13.01	23.05
CDY17710	Canola	cytosol	12.84	22.75
CDY02262	Canola	cytosol, plastid	43.92	18.04
CDY36781	Canola	extracellular	0.17	0.6

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	UniProt:A0A078HRH7	EnsemblPlants:CDY39363	ProteinID:CDY39363
ProteinID:CDY39363.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
EnsemblPlantsGene:GSBRNA2T00067805001	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFscan:PS50191	PANTHER:PTHR23324
PANTHER:PTHR23324:SF145	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EDDB76
SEG:seg	:	:	:	:	:

Description

BnaC05g15240DBnaC05g15240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRH7]

Coordinates

chrLK032446:+:199419..202887

Molecular Weight (calculated)

67738.5 Da

IEP (calculated)

8.321

GRAVY (calculated)

-0.467

Length

592 amino acids

Sequence
(BLAST)

001: MSGPLDRFTI PCFEGFSSTD ERKERKSDIE VSEDEKKTRI GIFKKKASKA SSKLRRSLSR KRRPSKGRSI DRTPSLTFED IHDVEELRYV SEFRQSLISD
101: ELLPPNLDDY HMMLRFLYAR RFDLGKAKLM WANMIQWRKD FGTDTILEDF EFPELDQVLK YYPQGYHGVD KEGRPVYIER LGRVDPCKLL QVTTLERYLR
201: YHVKEFEKTV TIKFPACCIA AKRHVDSSTT ILDVQGVGLK NFTKSARDLI TQLQKIDNDN YPETLHRMFI INAGPGFKLL WGTVKSFLDP KTVSKIDVLG
301: NKYQNKLLEV IDASQLPDFL GGTCTCVDQG GCMRSDKGPW KDPEILKMGR SGGTFCRHAG AQISPSHKQT YYGMKASDTS TAESGSEVEE LSSPKTNIYN
401: HVPKLTPVSE NIKAIGKVSP SVLSEYEDCV PMVDKVVDVA WQSQEMITNV SKGPEYTSGL ERIGTVSHIW RWLTMFFINI LALFASLTLP QTIRHSQLIP
501: SSARDELVII SSVVSRLCDL EKQIETLHLK KSEMPHEKEE LLNTAVYRVD ALEAELINAK KALHEALMKQ EELLGYIDRQ EEAKYKRKKF CW

Best Arabidopsis Sequence Match ( AT1G19650.1 )
(BLAST)

001: MSGPLDRFTS PCFSNNGEKR EKKSDFEVSE DEKKTRIGGI LKKKSSKSKF RHSLKRRGSR SIDRTLSLTF EDIHDAEELR YVSEFRQSLI SDHLLPPNLD
101: DYHIMLRFLF ARKFDLGKAK LMWTNMIQWR RDFGTDTILE DFEFPELDEV LRYYPQGYHG VDKEGRPVYI ERLGKVDASK LMQVTTLERY LRYHVKEFEK
201: TITVKFPACC IAAKRHIDSS TTILDVQGLG LKNFTKTARD LIIQLQKIDS DNYPETLHRM FIINAGSGFK LLWGTVKSFL DPKTVSKIHV LGNKYQNKLL
301: EMIDASQLPD FFGGTCTCAD QGGCMRSDKG PWKDSEILKM GRSGGTFCRH AGAFLSSDSQ ISSSDKPTYS LKVSDTSTAK SGSELEEMAS PKTNTNNHVP
401: KLTPVSEYAN GNISPTVLSE YEECVPMVDK VVDVAWQLQE MPNASEGPQY TSSLGKIGSV RHIWSWLTAF FISFFTLLAS LALPQTKEHS QLHSSSVRAE
501: LCDERIARES RPPSPPRSTI TERVIISSVL SRLGDLEKQI ENLHSRKSEM PHEKEELLNA AVYRVDALEA ELITTKKALH EALIRQEELL GYIDRQKEAK
601: CRRKKFCW

Arabidopsis Description

SFH4Phosphatidylinositol/phosphatidylcholine transfer protein SFH4 [Source:UniProtKB/Swiss-Prot;Acc:F4HP88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.