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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034638.1-P Field mustard cytosol 94.92 99.63
CDX76291 Canola cytosol 98.42 94.93
AT4G34580.2 Thale cress cytosol 88.97 91.7
CDX69071 Canola cytosol 84.59 90.45
CDX75444 Canola cytosol 84.59 90.45
CDY45318 Canola cytosol, plastid 74.61 85.2
CDX89709 Canola cytosol, mitochondrion 59.89 75.16
CDY15888 Canola cytosol 31.7 63.96
CDX99587 Canola cytosol, mitochondrion 31.35 63.25
CDY15887 Canola cytosol 59.19 61.57
CDX99586 Canola cytosol 59.02 61.27
CDY12126 Canola cytosol 55.17 58.88
CDX90317 Canola cytosol 54.99 58.47
KRH24439 Soybean plastid 33.45 58.23
KRH51503 Soybean cytosol 57.09 56.89
PGSC0003DMT400043532 Potato cytosol 55.34 56.73
KRH60806 Soybean cytosol 55.87 55.77
Solyc10g053900.1.1 Tomato cytosol, plastid 55.17 55.36
KRH29420 Soybean cytosol, nucleus, plastid 54.47 55.24
PGSC0003DMT400001903 Potato cytosol, nucleus, plastid 55.17 54.88
Solyc01g109860.2.1 Tomato cytosol, nucleus, plastid 54.99 54.7
PGSC0003DMT400021690 Potato nucleus 55.17 52.15
Solyc11g040280.1.1 Tomato cytosol 54.47 52.01
GSMUA_Achr5P23630_001 Banana cytosol 54.47 51.66
HORVU2Hr1G082530.1 Barley cytosol 52.19 51.47
TraesCS2B01G354800.2 Wheat nucleus 53.06 51.27
OQU84321 Sorghum cytosol 50.61 51.24
GSMUA_Achr6P03210_001 Banana cytosol 53.24 51.18
TraesCS2D01G335700.2 Wheat nucleus 52.89 51.1
TraesCS2A01G327200.2 Wheat nucleus 52.89 51.1
Os02t0440900-00 Rice cytosol 53.06 50.67
Os10t0122600-01 Rice cytosol, nucleus, plastid 52.89 50.5
OQU85018 Sorghum nucleus 53.59 49.92
Zm00001d016601_P006 Maize cytosol 52.89 49.92
CDX90316 Canola cytosol 52.71 48.71
CDY12125 Canola cytosol 52.36 48.54
CDX82040 Canola cytosol 50.09 47.43
GSMUA_Achr2P14280_001 Banana cytosol, nucleus, plastid 54.64 47.27
CDY39363 Canola cytosol 48.34 46.62
CDX69225 Canola mitochondrion 49.21 46.29
CDY11954 Canola cytosol 15.76 46.15
TraesCS6A01G097200.1 Wheat plastid 49.39 46.0
Zm00001d015175_P002 Maize plastid 51.84 45.89
Os02t0133200-01 Rice plasma membrane 50.61 45.73
TraesCS6D01G085200.1 Wheat plastid 49.21 45.69
CDY13810 Canola cytosol 50.44 45.57
TraesCS6B01G125700.1 Wheat plastid 48.86 45.37
HORVU6Hr1G017580.5 Barley plastid 49.39 44.9
CDY29415 Canola nucleus 48.16 44.72
CDX68133 Canola cytosol 46.76 43.91
CDX85889 Canola cytosol 46.58 43.82
CDY11957 Canola cytosol 31.52 40.45
CDY17730 Canola cytosol 28.2 40.05
CDX77773 Canola cytosol 28.2 39.56
CDY52084 Canola cytosol 37.65 36.63
CDX77382 Canola cytosol 37.83 34.9
CDY50018 Canola vacuole 38.18 34.12
CDY51966 Canola cytosol 35.2 33.78
CDY42378 Canola nucleus 37.83 33.59
CDY17397 Canola cytosol 34.85 33.45
CDY10540 Canola cytosol, nucleus, plastid 37.65 33.44
CDY36780 Canola plastid 32.4 32.46
CDY51073 Canola mitochondrion, nucleus 28.72 32.09
CDY02262 Canola cytosol, plastid 68.3 27.06
CDY52903 Canola cytosol 14.19 24.77
CDY53762 Canola cytosol 14.19 24.77
CDY10527 Canola cytosol 13.66 24.0
CDY42389 Canola cytosol 13.66 24.0
CDY40544 Canola cytosol 13.66 23.64
CDY28908 Canola cytosol 13.66 23.57
CDX77792 Canola cytosol 13.13 22.46
CDY41066 Canola cytosol 12.96 22.22
CDY25949 Canola cytosol 12.96 22.22
CDY17710 Canola cytosol 12.78 21.86
CDY36781 Canola extracellular 0.0 0.0
Protein Annotations
Gene3D:1.10.8.20Gene3D:3.40.525.10MapMan:35.1GO:A0A078FWE8UniProt:A0A078FWE8EnsemblPlants:CDY17469
ProteinID:CDY17469ProteinID:CDY17469.1InterPro:CRAL-TRIO_domInterPro:CRAL-TRIO_dom_sfInterPro:CRAL/TRIO_N_domInterPro:CRAL/TRIO_N_dom_sf
ncoils:CoilGO:GO:0005575GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00095645001InterPro:IPR001251
InterPro:IPR036865PFAM:PF00650PFAM:PF03765PRINTS:PR00180PFscan:PS50191PANTHER:PTHR23324
PANTHER:PTHR23324:SF77SMART:SM00516SMART:SM01100SUPFAM:SSF46938SUPFAM:SSF52087TMHMM:TMhelix
UniParc:UPI0004EE7538SEG:seg::::
Description
BnaC03g65940DBnaC03g65940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWE8]
Coordinates
chrLK032074:+:25237..28592
Molecular Weight (calculated)
65368.0 Da
IEP (calculated)
9.438
GRAVY (calculated)
-0.606
Length
571 amino acids
Sequence
(BLAST)
001: MSEEERKIVK MCSLKKKAIS ASNRFKNSFK KKGRRSTSRV MSVPIEDDID AEDLQALDAF RQALVLDELL PSKLDDLHMM LRFLRARKFD IEKAKQMWAD
101: MIQWRKDFGA DTIIEDFEFE EIDDVMKHYP QGYHGVDKEG RPVYIERLGQ IDANKLLQVT TMDRYVKYHV KEFEKTFKIK FPACSVAANK HIDQSTTILD
201: VQGVGLKNFS KSARELLQRL CKIDNENYPE TLNRMFIINA GSGFRLLWST VKSFLDPKTT AKIHVLGNKY HSKLLEVIDA SELPEFFGGA CTCEDKGGCM
301: RSDKGPWNDP EVLKMAINKE AKCSPISEDE HKHVDQGRST SVPESLERNN KKRDEDNAHE KQIATIDKSM DTAWPVKTQK SESFKVSKGL EGYVRKGAPK
401: KRDGLLVGGV MAFVMGIVAM VRLSKDVPRK LTEAALYGNS VCYEESMSKQ NKAQFAAPVS SSEYMLMVKR MAELEDKCMF LDLKPANVDS EKEEKLQAAL
501: NRVQVLEQEL TETKKALEEA LVSQKEILAY IEKKKKKKKL VRTKKNHKHL SFNFTQFFSA SECAKRKEMR S
Best Arabidopsis Sequence Match ( AT4G34580.1 )
(BLAST)
001: MAETKPEIEM SEEERKIVKI SSLKKKAINA SNRFKNSFKK KGRRSSSRVM SVPIEDDIDA EDLQALDAFR QALILDELLP SKLDDLHMML RFLRARKFDI
101: EKAKQMWSDM IQWRKDFGAD TIIEDFDFEE IDEVMKHYPQ GYHGVDKEGR PVYIERLGQI DANKLLQVTT MDRYVKYHVK EFEKTFKVKF PSCSVAANKH
201: IDQSTTILDV QGVGLKNFSK SARELLQRLC KIDNENYPET LNRMFIINAG SGFRLLWSTV KSFLDPKTTA KIHVLGNKYH SKLLEVIDAS ELPEFFGGAC
301: TCEDKGGCMR SDKGPWNDPE VLKIAINREA KCSPISEDEH KHVDQGRSTS GFESLERIKK KTDEDNVYEK QIATIDKSMD MAWLAKTQKA ENFPISKGLE
401: CYVRKGAPKK GDGLLVGGVM AFVMGIVAMV RLSKDVPRKL TEAALYGNSV CYEESTKSKQ NQGQFAAPVS SSEYMLMVKR MAELEDKCMF LDLKPAHVES
501: EKEEKLQAAL NRVQVLEQEL TETKKALEEA LVSQKEILAY IEKKKKKKKL FFGF
Arabidopsis Description
SFH1SRH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V672]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.