Factsheet for PGSC0003DMT400043532

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT4G36490.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g053900.1.1	Tomato	cytosol, plastid	96.41	94.38
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	75.04	72.82
PGSC0003DMT400021690	Potato	nucleus	76.84	70.86
KRH76738	Soybean	plastid	54.76	63.41
KRH28724	Soybean	plastid	54.76	63.15
KRH24439	Soybean	plastid	36.45	61.89
CDY15887	Canola	cytosol	59.6	60.47
CDX99586	Canola	cytosol	59.6	60.36
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	59.07	60.04
KRH60806	Soybean	cytosol	61.4	59.79
KRH51503	Soybean	cytosol	61.4	59.69
KRH69861	Soybean	plastid	58.89	59.1
KRH08168	Soybean	plastid	58.89	59.1
AT4G36490.1	Thale cress	plastid	57.45	58.93
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	51.53	58.81
KRH29420	Soybean	cytosol, nucleus, plastid	59.25	58.61
CDX75444	Canola	cytosol	55.66	58.05
CDX69071	Canola	cytosol	55.48	57.87
Bra034638.1-P	Field mustard	cytosol	56.37	57.72
AT4G34580.2	Thale cress	cytosol	56.73	57.04
AT2G18180.1	Thale cress	plastid	56.55	56.45
CDY12126	Canola	cytosol	54.04	56.26
VIT_03s0038g04480.t01	Wine grape	cytosol	62.3	55.97
GSMUA_Achr6P03210_001	Banana	cytosol	59.6	55.89
CDY45318	Canola	cytosol, plastid	50.09	55.8
AT4G39180.1	Thale cress	cytosol	55.3	55.6
Bra010699.1-P	Field mustard	cytosol	53.5	55.49
CDX90317	Canola	cytosol	53.5	55.49
CDY17469	Canola	cytosol	56.73	55.34
GSMUA_Achr5P23630_001	Banana	cytosol	59.6	55.15
Bra011544.1-P	Field mustard	cytosol, plastid	48.83	54.95
CDX89709	Canola	cytosol, mitochondrion	44.7	54.73
Bra017663.1-P	Field mustard	cytosol, plastid	44.17	53.95
CDX76291	Canola	cytosol	56.91	53.55
Os10t0122600-01	Rice	cytosol, nucleus, plastid	56.01	52.17
HORVU2Hr1G082530.1	Barley	cytosol	54.22	52.16
PGSC0003DMT400009598	Potato	cytosol	32.85	52.14
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	61.4	51.82
OQU84321	Sorghum	cytosol	52.24	51.6
TraesCS2A01G327200.2	Wheat	nucleus	54.58	51.44
AT2G16380.1	Thale cress	cytosol	50.45	51.37
TraesCS2D01G335700.2	Wheat	nucleus	54.4	51.27
TraesCS2B01G354800.2	Wheat	nucleus	54.4	51.27
Os02t0440900-00	Rice	cytosol	54.76	51.0
Zm00001d016601_P006	Maize	cytosol	55.12	50.74
OQU85018	Sorghum	nucleus	54.76	49.76
PGSC0003DMT400001942	Potato	cytosol	55.66	49.6
PGSC0003DMT400043545	Potato	cytosol	56.73	49.14
CDX69225	Canola	mitochondrion	52.6	48.27
TraesCS6B01G125700.1	Wheat	plastid	52.06	47.15
TraesCS6A01G097200.1	Wheat	plastid	51.89	47.15
Os02t0133200-01	Rice	plasma membrane	53.14	46.84
TraesCS6D01G085200.1	Wheat	plastid	51.71	46.83
HORVU6Hr1G017580.5	Barley	plastid	51.71	45.86
Zm00001d015175_P002	Maize	plastid	52.78	45.58
PGSC0003DMT400045517	Potato	cytosol	42.37	39.8
PGSC0003DMT400057292	Potato	nucleus	40.4	36.41
PGSC0003DMT400022405	Potato	cytosol, nucleus	35.01	33.51
PGSC0003DMT400057025	Potato	cytosol	14.72	24.33
PGSC0003DMT400034789	Potato	cytosol	14.72	24.26
CDY02262	Canola	cytosol, plastid	50.99	19.71
Bra013077.1-P	Field mustard	cytosol, plastid	50.99	19.47

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:102597834	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	UniProt:M1BET4
PFAM:PF00650	PFAM:PF03765	EnsemblPlantsGene:PGSC0003DMG400016902	PGSC:PGSC0003DMG400016902	EnsemblPlants:PGSC0003DMT400043532	PRINTS:PR00180
PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI000296CB96	RefSeq:XP_006365289.1	SEG:seg	:	:

Description

Sec14 cytosolic factor [Source:PGSC_GENE;Acc:PGSC0003DMG400016902]

Coordinates

chr10:+:44860647..44864930

Molecular Weight (calculated)

63800.6 Da

IEP (calculated)

7.528

GRAVY (calculated)

-0.559

Length

557 amino acids

Sequence
(BLAST)

001: MSGNMSGPLD QPFRPSLEKI DMENHEHERK TRLGSLKKKA VNASTKFRHS FTKKGRRNSR VMSVIVEDEH DAEEIKAVDA FRQALILDEL LPGKHDDYHK
101: LLRFLKARKF DIDKSKQMWA DMIKWRSEFG ADTIVEDFEF KEKEEVLKYY PQGHHGVDKE GRPVYIERIG QVDSVKLLQV TTMDRYLKYH VQEFERTLND
201: KMPACSIASK RHIDTSTTIL DVQGVGLKNF NKSARELIQC LQSIDGNNYP ESLCRMYIIN AGSGFRLLWN SVKSFLDPKT TAKIHVLGNK YQSKLLEVID
301: ASELPEFLGG TCTCADKGGC MLSDKGPWND PEIMKMVHNG EHKCSNRNFI STIDEKTISE DANVYVAHTQ LSPLHEEVDM NKNYHRAYDP EDYMPIVDKA
401: VDVTWSKANG RDFFPIHDAS KSPEGFSNHL FTGVMTLVMG IVTLVKMTRN MPRKLADATL QAHGYQLSEL TISSSEYFSM IKRMEELEEK VITLTNKPAS
501: LPPEKEELLN NAMKRIDTLE QDLSATHKSL ELALAHQAEL LAYIEKKRRK KKFLGIF

Best Arabidopsis Sequence Match ( AT2G21540.6 )
(BLAST)

001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF

Arabidopsis Description

SFH3Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]
SUBAcon: [cytosol,nucleus,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.