Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G18180.1 | Thale cress | plastid | 83.06 | 80.82 |
| CDX69225 | Canola | mitochondrion | 85.82 | 76.77 |
| KRH76738 | Soybean | plastid | 59.67 | 67.36 |
| KRH28724 | Soybean | plastid | 58.93 | 66.25 |
| KRH08168 | Soybean | plastid | 66.48 | 65.05 |
| KRH69861 | Soybean | plastid | 65.93 | 64.5 |
| PGSC0003DMT400001903 | Potato | cytosol, nucleus, plastid | 62.25 | 58.88 |
| AT2G21540.2 | Thale cress | cytosol, nucleus, vacuole | 59.3 | 58.76 |
| Solyc01g109860.2.1 | Tomato | cytosol, nucleus, plastid | 61.88 | 58.54 |
| PGSC0003DMT400043532 | Potato | cytosol | 58.93 | 57.45 |
| Solyc10g053900.1.1 | Tomato | cytosol, plastid | 59.12 | 56.41 |
| Solyc11g040280.1.1 | Tomato | cytosol | 62.06 | 56.35 |
| PGSC0003DMT400021690 | Potato | nucleus | 62.43 | 56.13 |
| AT4G34580.2 | Thale cress | cytosol | 56.54 | 55.42 |
| AT4G39180.1 | Thale cress | cytosol | 56.54 | 55.42 |
| VIT_04s0023g02400.t01 | Wine grape | cytosol, nucleus, plastid | 54.51 | 55.22 |
| GSMUA_Achr6P03210_001 | Banana | cytosol | 59.12 | 54.04 |
| GSMUA_Achr5P23630_001 | Banana | cytosol | 59.48 | 53.65 |
| OQU84321 | Sorghum | cytosol | 55.62 | 53.55 |
| Os10t0122600-01 | Rice | cytosol, nucleus, plastid | 56.72 | 51.51 |
| TraesCS2A01G327200.2 | Wheat | nucleus | 55.8 | 51.27 |
| TraesCS2D01G335700.2 | Wheat | nucleus | 55.8 | 51.27 |
| HORVU2Hr1G082530.1 | Barley | cytosol | 54.33 | 50.95 |
| TraesCS2B01G354800.2 | Wheat | nucleus | 55.43 | 50.93 |
| Os02t0440900-00 | Rice | cytosol | 55.99 | 50.84 |
| Zm00001d016601_P006 | Maize | cytosol | 55.62 | 49.92 |
| TraesCS6A01G097200.1 | Wheat | plastid | 56.17 | 49.76 |
| TraesCS6D01G085200.1 | Wheat | plastid | 56.17 | 49.59 |
| TraesCS6B01G125700.1 | Wheat | plastid | 56.17 | 49.59 |
| AT2G16380.1 | Thale cress | cytosol | 49.91 | 49.54 |
| Os02t0133200-01 | Rice | plasma membrane | 57.27 | 49.21 |
| OQU85018 | Sorghum | nucleus | 55.43 | 49.1 |
| GSMUA_Achr2P14280_001 | Banana | cytosol, nucleus, plastid | 58.93 | 48.48 |
| HORVU6Hr1G017580.5 | Barley | plastid | 55.25 | 47.77 |
| AT4G39170.1 | Thale cress | cytosol, nucleus, plastid | 53.96 | 47.72 |
| Zm00001d015175_P002 | Maize | plastid | 56.35 | 47.44 |
| AT2G21520.3 | Thale cress | cytosol | 54.33 | 46.31 |
| AT1G19650.1 | Thale cress | cytosol | 51.01 | 45.56 |
| AT1G75370.2 | Thale cress | cytosol | 50.46 | 41.02 |
| AT5G47510.4 | Thale cress | cytosol | 28.18 | 40.58 |
| AT3G24840.3 | Thale cress | cytosol | 42.73 | 40.0 |
| AT1G55690.4 | Thale cress | nucleus | 38.31 | 33.28 |
| AT5G56160.1 | Thale cress | cytosol | 35.36 | 33.28 |
| AT1G55840.1 | Thale cress | cytosol | 14.73 | 24.62 |
| AT5G47730.1 | Thale cress | cytosol | 14.73 | 23.46 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | EntrezGene:829801 | ProteinID:AEE86662.1 | ArrayExpress:AT4G36490 |
| EnsemblPlantsGene:AT4G36490 | RefSeq:AT4G36490 | TAIR:AT4G36490 | RefSeq:AT4G36490-TAIR-G | EnsemblPlants:AT4G36490.1 | TAIR:AT4G36490.1 |
| Symbol:ATSFH12 | EMBL:AY050419 | Unigene:At.26579 | EMBL:BT000834 | ProteinID:CAB16843.1 | ProteinID:CAB80315.1 |
| InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | GO:GO:0000139 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | InterPro:IPR001251 | InterPro:IPR036865 | RefSeq:NP_568006.1 |
| PFAM:PF00650 | PFAM:PF03765 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50191 | PANTHER:PTHR23324 |
| PANTHER:PTHR23324:SF55 | UniProt:Q94A34 | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 |
| UniParc:UPI00000AC036 | SEG:seg | : | : | : | : |
Description
SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
Coordinates
chr4:+:17221885..17225088
Molecular Weight (calculated)
61829.4 Da
IEP (calculated)
7.588
GRAVY (calculated)
-0.570
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.