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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY53762 Canola cytosol 91.08 90.52
CDY52903 Canola cytosol 91.08 90.52
CDY10527 Canola cytosol 90.46 90.46
Bra038021.1-P Field mustard cytosol 90.77 90.21
Bra030831.1-P Field mustard cytosol 90.15 90.15
CDY42389 Canola cytosol 89.85 89.85
EER96447 Sorghum cytosol 65.23 63.28
AT5G47730.1 Thale cress cytosol 65.85 62.76
Os09t0258000-01 Rice cytosol 64.62 62.69
TraesCS5B01G166800.1 Wheat cytosol 63.38 61.49
TraesCS5A01G170000.1 Wheat cytosol 63.38 61.49
TraesCS5D01G174400.1 Wheat cytosol 63.38 61.49
HORVU5Hr1G052230.2 Barley cytosol 63.38 61.31
Zm00001d005118_P002 Maize cytosol 61.54 50.76
AT5G47510.4 Thale cress cytosol 21.85 18.83
AT2G21540.2 Thale cress cytosol, nucleus, vacuole 25.23 14.96
AT2G16380.1 Thale cress cytosol 24.92 14.81
AT4G36490.1 Thale cress plastid 24.62 14.73
AT4G39180.1 Thale cress cytosol 24.92 14.62
AT4G34580.2 Thale cress cytosol 24.92 14.62
AT4G39170.1 Thale cress cytosol, nucleus, plastid 26.77 14.17
AT2G18180.1 Thale cress plastid 24.31 14.16
AT3G24840.3 Thale cress cytosol 25.23 14.14
AT2G21520.3 Thale cress cytosol 27.08 13.81
AT1G19650.1 Thale cress cytosol 25.54 13.65
AT5G56160.1 Thale cress cytosol 23.38 13.17
AT1G75370.2 Thale cress cytosol 26.77 13.02
AT1G55690.4 Thale cress nucleus 24.92 12.96
Protein Annotations
Gene3D:3.40.525.10MapMan:35.1EntrezGene:842034ProteinID:AEE33306.1ProteinID:AEE33307.1EMBL:AF419577
ArrayExpress:AT1G55840EnsemblPlantsGene:AT1G55840RefSeq:AT1G55840TAIR:AT1G55840RefSeq:AT1G55840-TAIR-GEnsemblPlants:AT1G55840.1
TAIR:AT1G55840.1EMBL:AY079108InterPro:CRAL-TRIO_domInterPro:CRAL-TRIO_dom_sfInterPro:CRAL/TRIO_N_domInterPro:CRAL/TRIO_N_dom_sf
ncoils:CoilInterPro:IPR001251InterPro:IPR036865RefSeq:NP_001077724.1RefSeq:NP_175980.1PFAM:PF00650
PFAM:PF03765PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PFscan:PS50191PANTHER:PTHR23324PANTHER:PTHR23324:SF86UniProt:Q8W580SMART:SM00516
SMART:SM01100SUPFAM:SSF46938SUPFAM:SSF52087UniParc:UPI00000A3345::
Description
At1g55840/F14J16_2 [Source:UniProtKB/TrEMBL;Acc:Q8W580]
Coordinates
chr1:+:20873425..20876346
Molecular Weight (calculated)
37002.6 Da
IEP (calculated)
8.261
GRAVY (calculated)
-0.451
Length
325 amino acids
Sequence
(BLAST)
001: MSITNEEAVK QLRALMEDVD DSLRESYRNI HQGYPTENLL RFLKARDGNV QKAHKMLLEC LEWRTQNEID KILTKPIVPV DLYRGIRDTQ LVGVSGYSKE
101: GLPVIAIGVG LSTYDKASVH YYVQSHIQMN EYRDRVVLPS ASKKQGRPIC TCLKILDMSG LKLSALSQIK LMTAITTIDD LNYPEKTETY YVVNVPYIFS
201: ACWKTIKPLL QERTKKKIQV LKGCGKDELL KIMDYESLPH FCRREGSGSG RHISNGTVDN CFSLDHSFHQ DLYDYVKQQA LVKGSGAPIR HGSVHVKFPE
301: PDTEGNKIFD TLENEFQKLG NDQKI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.