Factsheet for AT4G39180.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12126	Canola	cytosol	82.13	85.05
CDX90317	Canola	cytosol	80.87	83.43
Bra010699.1-P	Field mustard	cytosol	80.87	83.43
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	72.56	73.36
KRH24439	Soybean	plastid	37.91	64.02
AT4G34580.2	Thale cress	cytosol	58.12	58.12
KRH29420	Soybean	cytosol, nucleus, plastid	58.84	57.9
KRH51503	Soybean	cytosol	59.75	57.77
KRH60806	Soybean	cytosol	59.03	57.17
AT4G36490.1	Thale cress	plastid	55.42	56.54
PGSC0003DMT400043532	Potato	cytosol	55.6	55.3
AT2G18180.1	Thale cress	plastid	55.6	55.2
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	56.68	54.7
AT2G16380.1	Thale cress	cytosol	53.97	54.66
Solyc10g053900.1.1	Tomato	cytosol, plastid	56.14	54.66
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	55.96	54.01
TraesCS2D01G335700.2	Wheat	nucleus	55.23	51.78
TraesCS2A01G327200.2	Wheat	nucleus	54.87	51.44
TraesCS2B01G354800.2	Wheat	nucleus	54.69	51.27
Solyc11g040280.1.1	Tomato	cytosol	55.23	51.17
GSMUA_Achr6P03210_001	Banana	cytosol	54.69	51.01
Os02t0440900-00	Rice	cytosol	54.87	50.84
PGSC0003DMT400021690	Potato	nucleus	55.42	50.83
HORVU2Hr1G082530.1	Barley	cytosol	52.89	50.6
Os10t0122600-01	Rice	cytosol, nucleus, plastid	54.51	50.5
GSMUA_Achr5P23630_001	Banana	cytosol	53.97	49.67
OQU85018	Sorghum	nucleus	54.33	49.1
Zm00001d016601_P006	Maize	cytosol	52.89	48.43
OQU84321	Sorghum	cytosol	49.28	48.4
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	55.6	46.67
AT4G39170.1	Thale cress	cytosol, nucleus, plastid	51.26	46.25
AT2G21520.3	Thale cress	cytosol	52.35	45.53
TraesCS6A01G097200.1	Wheat	plastid	49.82	45.02
TraesCS6B01G125700.1	Wheat	plastid	49.82	44.88
TraesCS6D01G085200.1	Wheat	plastid	48.92	44.06
AT5G47510.4	Thale cress	cytosol	29.96	44.03
Os02t0133200-01	Rice	plasma membrane	49.46	43.35
HORVU6Hr1G017580.5	Barley	plastid	49.1	43.31
Zm00001d015175_P002	Maize	plastid	49.82	42.79
AT1G19650.1	Thale cress	cytosol	45.85	41.78
AT3G24840.3	Thale cress	cytosol	42.24	40.34
AT1G75370.2	Thale cress	cytosol	46.03	38.17
AT1G55690.4	Thale cress	nucleus	42.06	37.28
AT5G56160.1	Thale cress	cytosol	36.28	34.84
AT1G55840.1	Thale cress	cytosol	14.62	24.92
AT5G47730.1	Thale cress	cytosol	14.26	23.17

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	EntrezGene:830073	ProteinID:AEE87033.1	ArrayExpress:AT4G39180
EnsemblPlantsGene:AT4G39180	RefSeq:AT4G39180	TAIR:AT4G39180	RefSeq:AT4G39180-TAIR-G	EnsemblPlants:AT4G39180.1	TAIR:AT4G39180.1
ProteinID:CAB43633.1	ProteinID:CAB80581.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	UniProt:F4JVA9	GO:GO:0000139	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0006629	GO:GO:0006656	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001251	InterPro:IPR036865	RefSeq:NP_195629.2	PFAM:PF00650	PFAM:PF03765
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001185	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009009	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PRINTS:PR00180
PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF144	Symbol:SEC14	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	TMHMM:TMhelix	UniParc:UPI000034F1A4	SEG:seg	:

Description

SFH2Phosphatidylinositol/phosphatidylcholine transfer protein SFH2 [Source:UniProtKB/Swiss-Prot;Acc:F4JVA9]

Coordinates

chr4:-:18243774..18248805

Molecular Weight (calculated)

63863.2 Da

IEP (calculated)

8.837

GRAVY (calculated)

-0.593

Length

554 amino acids

Sequence
(BLAST)

001: MADTMVAHMD RHNKIDVEIS EDDKRLTKLC SLKKKAINAT NKFKHSMTKK GRRHSRVACV SIVDEIDTEE LQAVDAFRQA LILDELLPSK HDDHHMMLRF
101: LRARKFDLEK AKQMWSDMLN WRKEYGADTI MEDFDFKEIE EVVKYYPQGY HGVDKEGRPI YIERLGQVDA TKLMKVTTID RYVKYHVKEF EKTFNVKFPA
201: CSIAAKRHID QSTTILDVQG VGLSNFNKAA KDLLQSIQKI DNDNYPETLN RMFIINAGCG FRLLWNTVKS FLDPKTTAKI HVLGNKYQTK LLEIIDANEL
301: PEFLGGKCTC ADKGGCMRSD KGPWNDPEIF KLVQNGEGRC LRRSLSGIEE KTIFEYNNET KKKCEPEETH KQSAAEMEKK FIDTNVDAAA AADWPTKLNK
401: AEKNPTDLKD VYSAVNPLER KGYLYGSVMA LLMGIVGVMR LTKNMPRRLT EANVYSREGS AVYQDGVTVM SKQEYIAMVK KITDLEEKCK SMEAQAAFYM
501: EREKTLDAAL RRIDQLELQL SETNKALDET MTRQHEIMAF IEKKKKKKRK FLLF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.