Factsheet for Solyc11g040280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT4G36490.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021690	Potato	nucleus	97.16	96.19
Solyc10g053900.1.1	Tomato	cytosol, plastid	71.07	74.69
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	69.73	72.65
KRH76738	Soybean	plastid	52.68	65.49
KRH28724	Soybean	plastid	52.34	64.8
AT4G36490.1	Thale cress	plastid	56.35	62.06
KRH69861	Soybean	plastid	57.53	61.98
KRH08168	Soybean	plastid	57.53	61.98
KRH24439	Soybean	plastid	33.78	61.59
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	55.52	60.58
KRH51503	Soybean	cytosol	57.86	60.38
KRH60806	Soybean	cytosol	57.69	60.31
KRH29420	Soybean	cytosol, nucleus, plastid	56.69	60.21
CDY15887	Canola	cytosol	55.18	60.11
AT2G18180.1	Thale cress	plastid	56.02	60.04
CDX99586	Canola	cytosol	55.18	60.0
CDX75444	Canola	cytosol	52.17	58.43
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	47.49	58.2
AT4G34580.2	Thale cress	cytosol	53.85	58.12
CDX69071	Canola	cytosol	51.84	58.05
Bra034638.1-P	Field mustard	cytosol	51.84	56.99
CDX89709	Canola	cytosol, mitochondrion	43.31	56.92
CDY45318	Canola	cytosol, plastid	47.16	56.4
Bra011544.1-P	Field mustard	cytosol, plastid	46.49	56.16
VIT_03s0038g04480.t01	Wine grape	cytosol	58.03	55.97
GSMUA_Achr5P23630_001	Banana	cytosol	56.19	55.81
GSMUA_Achr6P03210_001	Banana	cytosol	55.35	55.72
CDY12126	Canola	cytosol	49.5	55.33
AT4G39180.1	Thale cress	cytosol	51.17	55.23
Bra017663.1-P	Field mustard	cytosol, plastid	41.64	54.61
CDX90317	Canola	cytosol	49.0	54.56
Bra010699.1-P	Field mustard	cytosol	49.0	54.56
CDY17469	Canola	cytosol	52.01	54.47
OQU84321	Sorghum	cytosol	50.5	53.55
Os10t0122600-01	Rice	cytosol, nucleus, plastid	52.84	52.84
AT2G16380.1	Thale cress	cytosol	48.33	52.83
CDX69225	Canola	mitochondrion	53.51	52.72
CDX76291	Canola	cytosol	52.17	52.7
Solyc04g080690.1.1	Tomato	cytosol	25.08	52.63
HORVU2Hr1G082530.1	Barley	cytosol	50.17	51.81
TraesCS2A01G327200.2	Wheat	nucleus	51.0	51.61
Os02t0440900-00	Rice	cytosol	51.51	51.51
TraesCS2D01G335700.2	Wheat	nucleus	50.84	51.44
Zm00001d016601_P006	Maize	cytosol	52.01	51.41
TraesCS2B01G354800.2	Wheat	nucleus	50.33	50.93
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	55.52	50.3
TraesCS6A01G097200.1	Wheat	plastid	51.34	50.08
Solyc10g053970.1.1	Tomato	cytosol	52.01	49.92
TraesCS6B01G125700.1	Wheat	plastid	51.34	49.92
OQU85018	Sorghum	nucleus	51.17	49.92
Solyc01g109870.2.1	Tomato	cytosol	52.01	49.76
TraesCS6D01G085200.1	Wheat	plastid	51.0	49.59
HORVU6Hr1G017580.5	Barley	plastid	51.34	48.89
Os02t0133200-01	Rice	plasma membrane	51.17	48.42
Zm00001d015175_P002	Maize	plastid	51.17	47.44
Solyc09g060090.2.1	Tomato	cytosol	39.13	39.46
Solyc07g066090.2.1	Tomato	nucleus	37.79	36.45
Solyc10g005740.1.1	Tomato	nucleus	37.46	36.25
Solyc08g078680.2.1	Tomato	cytosol	28.09	35.0
Solyc07g065700.2.1	Tomato	cytosol	8.03	26.09
Solyc11g012790.1.1	Tomato	cytosol	14.38	25.44
CDY02262	Canola	cytosol, plastid	48.83	20.26
Bra013077.1-P	Field mustard	cytosol, plastid	48.83	20.01

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	UniProt:K4D800	PFAM:PF00650	PFAM:PF03765
PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:Solyc11g040280.1	EnsemblPlants:Solyc11g040280.1.1	UniParc:UPI0002769F8D	SEG:seg

Description

No Description!

Coordinates

chr11:+:37966530..37969446

Molecular Weight (calculated)

67828.8 Da

IEP (calculated)

8.905

GRAVY (calculated)

-0.591

Length

598 amino acids

Sequence
(BLAST)

001: MSGKMSTGPL ERPLRPSMEK IDVENTEDKK PRLGSFKKKA LNASNKFRQS LKKTGRRSSS RVMSVVFEDE HDAEEAKLVD AFRQALILDE LLPAQHDDYH
101: MMLRFLKARK FELDKSKQMW SDMINWRKEF GADTIMQDFE FKEKEEVVKY YPQGHHGVDK DGRPVYIERI GQVDSTKLLQ VTTMDRYLKY HVQEFERTFN
201: EKLPACSIAA KKHIDTSTTI LDVQGVGLKN FNKSARELLQ CLQGIDGNNY PESLCRMYII NAGSGFRLLW NSVKSFLDPK TTAKINVLGN KYQSKLLEII
301: DASELPEFLG GTCTCEDKGG CMLSDKGPWN DPEIMKMVHS GMHKCTKRTS IPVDEKTISE DGNAKPKDAK KSNSINLRTA SSKIQRDHVS PTQLSTVHEE
401: DDIIKKQPSA YTPVVDKVIE PTIPKATKAD NYAIAKASDF LPMHDISKSP DGFSNHLFTG VMTFVMGVVT MVRMTRNMPR KLTDSTLLSG SLKGVDMQVK
501: PVHGQEYRLS GPAISNNEYF SMMKRMGELE EKVISLSNTP SSLPPEKEEM LNNVMSHVDK LEQELCATKM ALETALSRQE ELLAYIEKKK KKKNFFGF

Best Arabidopsis Sequence Match ( AT2G18180.2 )
(BLAST)

001: MSLNVDLDVC VLERPNVCSF KKRSCSKLSC SLTKKRRSSK VMSVEIFEDE HDAEELKVVD AFRQVLILDE LLPDKHDDYH MMLRFLKARK FDLEKTNQMW
101: SDMLRWRKEF GADTVMEDFE FKEIDEVLKY YPQGHHGVDK EGRPVYIERL GQVDSTKLMQ VTTMDRYVNY HVMEFERTFN VKFPACSIAA KKHIDQSTTI
201: LDVQGVGLKN FNKAARDLIT RLQKVDGDNY PETLNRMFII NAGSGFRMLW NTVKSFLDPK TTAKIHVLGN KYQSKLLEII DASELPEFLG GSCTCADNGG
301: CMRSDKGPWN NPDIMKRVNN GDHICSKRSQ ADNAGENIIS QGNNSAVEEA PETDQSQPSP CQNVVVAHPA WNIPEAHKFS LSKRDVYAIQ EACKATNESG
401: RSPIFTGVMA FVMGVVTMIR VTKNVPRKLT ESTIYSSPVY CDENSMNKSS MHGKKMATTT ISGEDFMAVM KRMAELEQKV TNLSAQPATM PPEKEEMLNA
501: AISRADFLEQ ELAATKKALD DSLTRQEDLV AYVERKKKKK KLFTW

Arabidopsis Description

SFH10Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.